Cluster: C6.bin_3_CGC10
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: C6.bin_3
- CGC Family ID: CGCFAM_01735
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C6_contig_200 | C6_contig_200_1109 | 1109619 | 1110794 | + | 2.A.39.1.3 |
| pfam | C6_contig_200 | C6_contig_200_1110 | 1110768 | 1111991 | - | PFK |
| CAZyme | C6_contig_200 | C6_contig_200_1111 | 1112218 | 1113234 | + | GT2 |
Gene ID: C6_contig_200_1109
Type: TC
Location: 1109619 - 1110794 (+)
Type: TC
Location: 1109619 - 1110794 (+)
Gene ID: C6_contig_200_1110
Type: pfam
Location: 1110768 - 1111991 (-)
Type: pfam
Location: 1110768 - 1111991 (-)
Gene ID: C6_contig_200_1111
Type: CAZyme
Location: 1112218 - 1113234 (+)
Type: CAZyme
Location: 1112218 - 1113234 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea
Species
Dorea formicigenerans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C6_contig_200_1111 | vegan > omnivore | 1.19412 | 0.02258 |
| C6_contig_200_1111 | vegetarian > omnivore | 1.24462 | 0.04130 |