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Cluster: C59.bin_4_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme C59_contig_276 C59_contig_276_7 7605 10001 + GH3
TF C59_contig_276 C59_contig_276_8 10098 10808 + LytTR
pfam C59_contig_276 C59_contig_276_9 10805 12127 + HATPase_c_5
CAZyme C59_contig_276 C59_contig_276_10 12315 15347 + GH3
pfam C59_contig_276 C59_contig_276_11 15371 15934 + GtrA_DPMS_TM
pfam C59_contig_276 C59_contig_276_12 16186 16815 + Flavodoxin_2 | FMN_red
TC C59_contig_276 C59_contig_276_13 16943 17917 + 2.A.19.5.2
STP C59_contig_276 C59_contig_276_14 18131 19321 + Aminotran_1_2
TC C59_contig_276 C59_contig_276_15 19351 20658 + 2.A.35.1.5
TC C59_contig_276 C59_contig_276_16 20678 22015 + 2.A.66.1.33
Gene ID: C59_contig_276_7
Type: CAZyme
Location: 7605 - 10001 (+)
Gene ID: C59_contig_276_8
Type: TF
Location: 10098 - 10808 (+)
Gene ID: C59_contig_276_9
Type: pfam
Location: 10805 - 12127 (+)
Gene ID: C59_contig_276_10
Type: CAZyme
Location: 12315 - 15347 (+)
Gene ID: C59_contig_276_11
Type: pfam
Location: 15371 - 15934 (+)
Gene ID: C59_contig_276_12
Type: pfam
Location: 16186 - 16815 (+)
Gene ID: C59_contig_276_13
Type: TC
Location: 16943 - 17917 (+)
Gene ID: C59_contig_276_14
Type: STP
Location: 18131 - 19321 (+)
Gene ID: C59_contig_276_15
Type: TC
Location: 19351 - 20658 (+)
Gene ID: C59_contig_276_16
Type: TC
Location: 20678 - 22015 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C59_contig_276_8 vegan > omnivore 1.75242 0.00821
C59_contig_276_11 vegetarian > vegan 1.05057 0.02857
C59_contig_276_14 vegan > omnivore 1.50126 0.03568

🧭 Explore Read Mapping of CGC

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