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Cluster: C57.bin_3_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC C57_contig_6582 C57_contig_6582_145 177486 180986 + 1.B.14.6.1
pfam C57_contig_6582 C57_contig_6582_146 181005 182375 + SusD_RagB | SusD-like_3
pfam C57_contig_6582 C57_contig_6582_147 182449 184344 + Thioredoxin | Thioredoxin | GSHPx | AhpC-TSA | AhpC-TSA | Redoxin | Redoxin | Thioredoxin_8 | Thioredoxin_8
TC C57_contig_6582 C57_contig_6582_148 184842 186107 - 2.A.1.25.5
pfam C57_contig_6582 C57_contig_6582_149 186097 187491 - SpoIID
pfam C57_contig_6582 C57_contig_6582_150 187495 188427 - DUF4922
CAZyme C57_contig_6582 C57_contig_6582_151 188470 189846 - GT2
Gene ID: C57_contig_6582_145
Type: TC
Location: 177486 - 180986 (+)
Gene ID: C57_contig_6582_146
Type: pfam
Location: 181005 - 182375 (+)
Gene ID: C57_contig_6582_147
Type: pfam
Location: 182449 - 184344 (+)
Gene ID: C57_contig_6582_148
Type: TC
Location: 184842 - 186107 (-)
Gene ID: C57_contig_6582_149
Type: pfam
Location: 186097 - 187491 (-)
Gene ID: C57_contig_6582_150
Type: pfam
Location: 187495 - 188427 (-)
Gene ID: C57_contig_6582_151
Type: CAZyme
Location: 188470 - 189846 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C57_contig_6582_145 vegetarian > omnivore 3.68721 0.03994

🧭 Explore Read Mapping of CGC

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