Cluster: C55.CMAG_2_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: C55.CMAG_2
- CGC Family ID: CGCFAM_00054
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C55_contig_1093 | C55_contig_1093_773 | 787391 | 788011 | - | 2.A.115.2.2 |
| CAZyme | C55_contig_1093 | C55_contig_1093_774 | 788040 | 789059 | - | GH36 |
| CAZyme | C55_contig_1093 | C55_contig_1093_775 | 789257 | 790306 | - | GH36 |
| TC | C55_contig_1093 | C55_contig_1093_776 | 790376 | 791752 | - | 2.A.2.1.1 |
Gene ID: C55_contig_1093_773
Type: TC
Location: 787391 - 788011 (-)
Type: TC
Location: 787391 - 788011 (-)
Gene ID: C55_contig_1093_774
Type: CAZyme
Location: 788040 - 789059 (-)
Type: CAZyme
Location: 788040 - 789059 (-)
Gene ID: C55_contig_1093_775
Type: CAZyme
Location: 789257 - 790306 (-)
Type: CAZyme
Location: 789257 - 790306 (-)
Gene ID: C55_contig_1093_776
Type: TC
Location: 790376 - 791752 (-)
Type: TC
Location: 790376 - 791752 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Romboutsia
Species
Romboutsia timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C55_contig_1093_774 | vegan > omnivore | 2.94784 | 0.00574 |
| C55_contig_1093_776 | vegan > omnivore | 3.16251 | 0.00574 |
| C55_contig_1093_776 | vegetarian > omnivore | 1.89157 | 0.02011 |