Cluster: C55.CMAG_2_CGC6
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: C55.CMAG_2
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C55_contig_1093 | C55_contig_1093_619 | 617945 | 619045 | - | 2.A.120.1.1 |
| TC | C55_contig_1093 | C55_contig_1093_620 | 619199 | 620470 | - | 2.A.23.1.2 |
| TC | C55_contig_1093 | C55_contig_1093_621 | 620693 | 621130 | - | 3.A.7.19.1 |
| CAZyme | C55_contig_1093 | C55_contig_1093_622 | 621259 | 623121 | - | GH13_39 |
| CAZyme | C55_contig_1093 | C55_contig_1093_623 | 623123 | 625546 | - | GT35 |
| CAZyme | C55_contig_1093 | C55_contig_1093_624 | 625554 | 627005 | - | GT5 |
| pfam | C55_contig_1093 | C55_contig_1093_625 | 627021 | 628151 | - | NTP_transferase | Hexapep_GlmU |
| pfam | C55_contig_1093 | C55_contig_1093_626 | 628154 | 629305 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | C55_contig_1093 | C55_contig_1093_627 | 629340 | 631352 | - | CBM48 | GH13_9 |
| TC | C55_contig_1093 | C55_contig_1093_628 | 631645 | 632640 | - | 8.A.21.2.1 |
Gene ID: C55_contig_1093_619
Type: TC
Location: 617945 - 619045 (-)
Type: TC
Location: 617945 - 619045 (-)
Gene ID: C55_contig_1093_620
Type: TC
Location: 619199 - 620470 (-)
Type: TC
Location: 619199 - 620470 (-)
Gene ID: C55_contig_1093_621
Type: TC
Location: 620693 - 621130 (-)
Type: TC
Location: 620693 - 621130 (-)
Gene ID: C55_contig_1093_622
Type: CAZyme
Location: 621259 - 623121 (-)
Type: CAZyme
Location: 621259 - 623121 (-)
Gene ID: C55_contig_1093_623
Type: CAZyme
Location: 623123 - 625546 (-)
Type: CAZyme
Location: 623123 - 625546 (-)
Gene ID: C55_contig_1093_624
Type: CAZyme
Location: 625554 - 627005 (-)
Type: CAZyme
Location: 625554 - 627005 (-)
Gene ID: C55_contig_1093_625
Type: pfam
Location: 627021 - 628151 (-)
Type: pfam
Location: 627021 - 628151 (-)
Gene ID: C55_contig_1093_626
Type: pfam
Location: 628154 - 629305 (-)
Type: pfam
Location: 628154 - 629305 (-)
Gene ID: C55_contig_1093_627
Type: CAZyme
Location: 629340 - 631352 (-)
Type: CAZyme
Location: 629340 - 631352 (-)
Gene ID: C55_contig_1093_628
Type: TC
Location: 631645 - 632640 (-)
Type: TC
Location: 631645 - 632640 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Romboutsia
Species
Romboutsia timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C55_contig_1093_628 | vegan > omnivore | 2.19099 | 0.00574 |
| C55_contig_1093_628 | vegetarian > omnivore | 3.78452 | 0.02011 |