Cluster: C55.CMAG_2_CGC29
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: C55.CMAG_2
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C55_contig_1093 | C55_contig_1093_2523 | 2651495 | 2652805 | - | 2.A.1.23.2 |
| pfam | C55_contig_1093 | C55_contig_1093_2524 | 2653030 | 2653461 | - | VanZ |
| STP | C55_contig_1093 | C55_contig_1093_2525 | 2653652 | 2655445 | - | HATPase_c | HisKA |
| TC | C55_contig_1093 | C55_contig_1093_2526 | 2655559 | 2657037 | - | 2.A.35.1.5 |
| TC | C55_contig_1093 | C55_contig_1093_2527 | 2657249 | 2658628 | + | 2.A.8.1.13 |
| TF | C55_contig_1093 | C55_contig_1093_2528 | 2658703 | 2659155 | - | MarR |
| NULL(UNKNOWN) | C55_contig_1093 | C55_contig_1093_2529 | 2659515 | 2659832 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C55_contig_1093 | C55_contig_1093_2530 | 2660054 | 2662438 | - | 3.A.3.6.10 |
| TF | C55_contig_1093 | C55_contig_1093_2531 | 2662450 | 2662815 | - | HTH_5 |
| pfam | C55_contig_1093 | C55_contig_1093_2532 | 2663035 | 2663331 | - | YCII |
| CAZyme | C55_contig_1093 | C55_contig_1093_2533 | 2663467 | 2664360 | - | GH73 |
Gene ID: C55_contig_1093_2523
Type: TC
Location: 2651495 - 2652805 (-)
Type: TC
Location: 2651495 - 2652805 (-)
Gene ID: C55_contig_1093_2524
Type: pfam
Location: 2653030 - 2653461 (-)
Type: pfam
Location: 2653030 - 2653461 (-)
Gene ID: C55_contig_1093_2525
Type: STP
Location: 2653652 - 2655445 (-)
Type: STP
Location: 2653652 - 2655445 (-)
Gene ID: C55_contig_1093_2526
Type: TC
Location: 2655559 - 2657037 (-)
Type: TC
Location: 2655559 - 2657037 (-)
Gene ID: C55_contig_1093_2527
Type: TC
Location: 2657249 - 2658628 (+)
Type: TC
Location: 2657249 - 2658628 (+)
Gene ID: C55_contig_1093_2528
Type: TF
Location: 2658703 - 2659155 (-)
Type: TF
Location: 2658703 - 2659155 (-)
Gene ID: C55_contig_1093_2529
Type:
Location: 2659515 - 2659832 (-)
Type:
Location: 2659515 - 2659832 (-)
Gene ID: C55_contig_1093_2530
Type: TC
Location: 2660054 - 2662438 (-)
Type: TC
Location: 2660054 - 2662438 (-)
Gene ID: C55_contig_1093_2531
Type: TF
Location: 2662450 - 2662815 (-)
Type: TF
Location: 2662450 - 2662815 (-)
Gene ID: C55_contig_1093_2532
Type: pfam
Location: 2663035 - 2663331 (-)
Type: pfam
Location: 2663035 - 2663331 (-)
Gene ID: C55_contig_1093_2533
Type: CAZyme
Location: 2663467 - 2664360 (-)
Type: CAZyme
Location: 2663467 - 2664360 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Romboutsia
Species
Romboutsia timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C55_contig_1093_2524 | vegan > omnivore | 2.40181 | 0.00574 |
| C55_contig_1093_2524 | vegetarian > omnivore | 1.82848 | 0.02011 |
| C55_contig_1093_2533 | vegan > omnivore | 1.25539 | 0.00574 |
| C55_contig_1093_2533 | vegetarian > omnivore | 2.22722 | 0.02011 |