Cluster: C55.CMAG_2_CGC23
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: C55.CMAG_2
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C55_contig_1093 | C55_contig_1093_2012 | 2110813 | 2113326 | + | 3.A.3.23.2 |
| NULL(UNKNOWN) | C55_contig_1093 | C55_contig_1093_2013 | 2113686 | 2114006 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C55_contig_1093 | C55_contig_1093_2014 | 2114030 | 2115244 | + | GH3 |
| NULL(UNKNOWN) | C55_contig_1093 | C55_contig_1093_2015 | 2115510 | 2116274 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C55_contig_1093 | C55_contig_1093_2016 | 2116750 | 2118114 | + | 2.A.2.1.1 |
| CAZyme | C55_contig_1093 | C55_contig_1093_2017 | 2118322 | 2120274 | + | GH42 |
| CAZyme | C55_contig_1093 | C55_contig_1093_2018 | 2120296 | 2122386 | + | GH36 |
| pfam | C55_contig_1093 | C55_contig_1093_2019 | 2122430 | 2122651 | - | DUF378 |
| TC | C55_contig_1093 | C55_contig_1093_2020 | 2122969 | 2124531 | + | 2.A.68.1.2 |
| pfam | C55_contig_1093 | C55_contig_1093_2021 | 2124745 | 2125860 | + | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| TC | C55_contig_1093 | C55_contig_1093_2022 | 2126198 | 2128651 | + | 2.A.16.2.2 |
| CAZyme | C55_contig_1093 | C55_contig_1093_2023 | 2128997 | 2132038 | + | GH2 |
| TC | C55_contig_1093 | C55_contig_1093_2024 | 2132434 | 2133555 | + | 3.B.1.1.5 |
Gene ID: C55_contig_1093_2012
Type: TC
Location: 2110813 - 2113326 (+)
Type: TC
Location: 2110813 - 2113326 (+)
Gene ID: C55_contig_1093_2013
Type:
Location: 2113686 - 2114006 (+)
Type:
Location: 2113686 - 2114006 (+)
Gene ID: C55_contig_1093_2014
Type: CAZyme
Location: 2114030 - 2115244 (+)
Type: CAZyme
Location: 2114030 - 2115244 (+)
Gene ID: C55_contig_1093_2015
Type:
Location: 2115510 - 2116274 (-)
Type:
Location: 2115510 - 2116274 (-)
Gene ID: C55_contig_1093_2016
Type: TC
Location: 2116750 - 2118114 (+)
Type: TC
Location: 2116750 - 2118114 (+)
Gene ID: C55_contig_1093_2017
Type: CAZyme
Location: 2118322 - 2120274 (+)
Type: CAZyme
Location: 2118322 - 2120274 (+)
Gene ID: C55_contig_1093_2018
Type: CAZyme
Location: 2120296 - 2122386 (+)
Type: CAZyme
Location: 2120296 - 2122386 (+)
Gene ID: C55_contig_1093_2019
Type: pfam
Location: 2122430 - 2122651 (-)
Type: pfam
Location: 2122430 - 2122651 (-)
Gene ID: C55_contig_1093_2020
Type: TC
Location: 2122969 - 2124531 (+)
Type: TC
Location: 2122969 - 2124531 (+)
Gene ID: C55_contig_1093_2021
Type: pfam
Location: 2124745 - 2125860 (+)
Type: pfam
Location: 2124745 - 2125860 (+)
Gene ID: C55_contig_1093_2022
Type: TC
Location: 2126198 - 2128651 (+)
Type: TC
Location: 2126198 - 2128651 (+)
Gene ID: C55_contig_1093_2023
Type: CAZyme
Location: 2128997 - 2132038 (+)
Type: CAZyme
Location: 2128997 - 2132038 (+)
Gene ID: C55_contig_1093_2024
Type: TC
Location: 2132434 - 2133555 (+)
Type: TC
Location: 2132434 - 2133555 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Romboutsia
Species
Romboutsia timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C55_contig_1093_2015 | vegan > omnivore | 2.67013 | 0.00574 |
| C55_contig_1093_2017 | vegan > omnivore | 1.72316 | 0.00574 |
| C55_contig_1093_2020 | vegan > omnivore | 2.23530 | 0.00574 |
| C55_contig_1093_2020 | vegetarian > omnivore | 4.85128 | 0.02011 |
| C55_contig_1093_2022 | vegan > omnivore | 1.40756 | 0.00574 |
| C55_contig_1093_2022 | vegetarian > omnivore | 2.16155 | 0.02011 |