Cluster: C55.CMAG_2_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: C55.CMAG_2
- CGC Family ID: CGCFAM_02739
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C55_contig_1093 | C55_contig_1093_1852 | 1963486 | 1963848 | + | 1.E.14.1.1 |
| TC | C55_contig_1093 | C55_contig_1093_1853 | 1963851 | 1964540 | + | 2.A.122.1.5 |
| TC | C55_contig_1093 | C55_contig_1093_1854 | 1965021 | 1965887 | + | 2.A.115.1.2 |
| pfam | C55_contig_1093 | C55_contig_1093_1855 | 1966214 | 1967011 | + | MORN | MORN | MORN | MORN | MORN | MORN | MORN | MORN |
| pfam | C55_contig_1093 | C55_contig_1093_1856 | 1967185 | 1968156 | + | CAP | CAP_assoc_N |
| CAZyme | C55_contig_1093 | C55_contig_1093_1857 | 1968182 | 1968877 | + | CE4 |
Gene ID: C55_contig_1093_1852
Type: TC
Location: 1963486 - 1963848 (+)
Type: TC
Location: 1963486 - 1963848 (+)
Gene ID: C55_contig_1093_1853
Type: TC
Location: 1963851 - 1964540 (+)
Type: TC
Location: 1963851 - 1964540 (+)
Gene ID: C55_contig_1093_1854
Type: TC
Location: 1965021 - 1965887 (+)
Type: TC
Location: 1965021 - 1965887 (+)
Gene ID: C55_contig_1093_1855
Type: pfam
Location: 1966214 - 1967011 (+)
Type: pfam
Location: 1966214 - 1967011 (+)
Gene ID: C55_contig_1093_1856
Type: pfam
Location: 1967185 - 1968156 (+)
Type: pfam
Location: 1967185 - 1968156 (+)
Gene ID: C55_contig_1093_1857
Type: CAZyme
Location: 1968182 - 1968877 (+)
Type: CAZyme
Location: 1968182 - 1968877 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Romboutsia
Species
Romboutsia timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C55_contig_1093_1855 | vegan > omnivore | 2.33561 | 0.00574 |
| C55_contig_1093_1855 | vegetarian > omnivore | 2.11543 | 0.02011 |