Cluster: C55.CMAG_2_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: C55.CMAG_2
- CGC Family ID: CGCFAM_05262
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C55_contig_1093 | C55_contig_1093_1842 | 1950891 | 1951730 | - | CE4 |
| NULL(UNKNOWN) | C55_contig_1093 | C55_contig_1093_1843 | 1951768 | 1952613 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C55_contig_1093 | C55_contig_1093_1844 | 1952753 | 1954174 | - | 2.A.35.1.1 |
| pfam | C55_contig_1093 | C55_contig_1093_1845 | 1954669 | 1955265 | + | RNase_H | Cauli_VI |
| CAZyme | C55_contig_1093 | C55_contig_1093_1846 | 1955325 | 1957091 | - | GH18 |
Gene ID: C55_contig_1093_1842
Type: CAZyme
Location: 1950891 - 1951730 (-)
Type: CAZyme
Location: 1950891 - 1951730 (-)
Gene ID: C55_contig_1093_1843
Type:
Location: 1951768 - 1952613 (-)
Type:
Location: 1951768 - 1952613 (-)
Gene ID: C55_contig_1093_1844
Type: TC
Location: 1952753 - 1954174 (-)
Type: TC
Location: 1952753 - 1954174 (-)
Gene ID: C55_contig_1093_1845
Type: pfam
Location: 1954669 - 1955265 (+)
Type: pfam
Location: 1954669 - 1955265 (+)
Gene ID: C55_contig_1093_1846
Type: CAZyme
Location: 1955325 - 1957091 (-)
Type: CAZyme
Location: 1955325 - 1957091 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Romboutsia
Species
Romboutsia timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C55_contig_1093_1844 | vegan > omnivore | 2.13312 | 0.00574 |
| C55_contig_1093_1844 | vegetarian > omnivore | 2.85837 | 0.02011 |