Cluster: C55.CMAG_2_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: C55.CMAG_2
- CGC Family ID: CGCFAM_02738
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C55_contig_1093 | C55_contig_1093_1604 | 1716730 | 1717503 | + | CE4 |
| TC | C55_contig_1093 | C55_contig_1093_1605 | 1717573 | 1718028 | + | 9.B.105.1.5 |
| pfam | C55_contig_1093 | C55_contig_1093_1606 | 1718037 | 1718948 | + | PseudoU_synth_2 | S4 |
| STP | C55_contig_1093 | C55_contig_1093_1607 | 1719135 | 1719668 | + | Pribosyltran |
| TC | C55_contig_1093 | C55_contig_1093_1608 | 1719767 | 1721011 | + | 2.A.40.1.4 |
| TC | C55_contig_1093 | C55_contig_1093_1609 | 1721432 | 1722451 | + | 3.A.1.2.17 |
Gene ID: C55_contig_1093_1604
Type: CAZyme
Location: 1716730 - 1717503 (+)
Type: CAZyme
Location: 1716730 - 1717503 (+)
Gene ID: C55_contig_1093_1605
Type: TC
Location: 1717573 - 1718028 (+)
Type: TC
Location: 1717573 - 1718028 (+)
Gene ID: C55_contig_1093_1606
Type: pfam
Location: 1718037 - 1718948 (+)
Type: pfam
Location: 1718037 - 1718948 (+)
Gene ID: C55_contig_1093_1607
Type: STP
Location: 1719135 - 1719668 (+)
Type: STP
Location: 1719135 - 1719668 (+)
Gene ID: C55_contig_1093_1608
Type: TC
Location: 1719767 - 1721011 (+)
Type: TC
Location: 1719767 - 1721011 (+)
Gene ID: C55_contig_1093_1609
Type: TC
Location: 1721432 - 1722451 (+)
Type: TC
Location: 1721432 - 1722451 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Romboutsia
Species
Romboutsia timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C55_contig_1093_1609 | vegan > omnivore | 1.92497 | 0.00574 |
| C55_contig_1093_1609 | vegetarian > omnivore | 2.41454 | 0.02011 |