Cluster: C55.CMAG_2_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: C55.CMAG_2
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C55_contig_1093 | C55_contig_1093_1561 | 1674308 | 1675276 | + | 9.B.146.1.6 |
| pfam | C55_contig_1093 | C55_contig_1093_1562 | 1675293 | 1676651 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | C55_contig_1093 | C55_contig_1093_1563 | 1676686 | 1677816 | + | 2.A.103.1.3 |
| CAZyme | C55_contig_1093 | C55_contig_1093_1564 | 1677831 | 1679066 | + | GT28 |
Gene ID: C55_contig_1093_1561
Type: TC
Location: 1674308 - 1675276 (+)
Type: TC
Location: 1674308 - 1675276 (+)
Gene ID: C55_contig_1093_1562
Type: pfam
Location: 1675293 - 1676651 (+)
Type: pfam
Location: 1675293 - 1676651 (+)
Gene ID: C55_contig_1093_1563
Type: TC
Location: 1676686 - 1677816 (+)
Type: TC
Location: 1676686 - 1677816 (+)
Gene ID: C55_contig_1093_1564
Type: CAZyme
Location: 1677831 - 1679066 (+)
Type: CAZyme
Location: 1677831 - 1679066 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Romboutsia
Species
Romboutsia timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C55_contig_1093_1561 | vegan > omnivore | 3.02500 | 0.00574 |
| C55_contig_1093_1561 | vegetarian > omnivore | 5.71803 | 0.02011 |
| C55_contig_1093_1564 | vegan > omnivore | 3.61301 | 0.00574 |
| C55_contig_1093_1564 | vegetarian > omnivore | 2.90393 | 0.02011 |