Cluster: C55.CMAG_2_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: C55.CMAG_2
- CGC Family ID: CGCFAM_01183
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C55_contig_1093 | C55_contig_1093_1491 | 1595741 | 1596394 | + | 9.B.18.1.3 |
| pfam | C55_contig_1093 | C55_contig_1093_1492 | 1596469 | 1597554 | + | PS_pyruv_trans |
| TC | C55_contig_1093 | C55_contig_1093_1493 | 1597568 | 1599106 | + | 2.A.66.4.2 |
| pfam | C55_contig_1093 | C55_contig_1093_1494 | 1599269 | 1600675 | + | O-antigen_lig |
| CAZyme | C55_contig_1093 | C55_contig_1093_1495 | 1600677 | 1601855 | + | GT2 |
| CAZyme | C55_contig_1093 | C55_contig_1093_1496 | 1601866 | 1602579 | + | GT32 |
| pfam | C55_contig_1093 | C55_contig_1093_1497 | 1602599 | 1604044 | + | O-antigen_lig | O-antigen_lig |
| CAZyme | C55_contig_1093 | C55_contig_1093_1498 | 1604075 | 1605226 | + | GT4 |
| CAZyme | C55_contig_1093 | C55_contig_1093_1499 | 1605235 | 1605960 | + | GT26 |
| pfam | C55_contig_1093 | C55_contig_1093_1500 | 1605980 | 1607086 | + | Epimerase_2 |
| TC | C55_contig_1093 | C55_contig_1093_1501 | 1607174 | 1608100 | + | 9.B.97.1.9 |
Gene ID: C55_contig_1093_1491
Type: TC
Location: 1595741 - 1596394 (+)
Type: TC
Location: 1595741 - 1596394 (+)
Gene ID: C55_contig_1093_1492
Type: pfam
Location: 1596469 - 1597554 (+)
Type: pfam
Location: 1596469 - 1597554 (+)
Gene ID: C55_contig_1093_1493
Type: TC
Location: 1597568 - 1599106 (+)
Type: TC
Location: 1597568 - 1599106 (+)
Gene ID: C55_contig_1093_1494
Type: pfam
Location: 1599269 - 1600675 (+)
Type: pfam
Location: 1599269 - 1600675 (+)
Gene ID: C55_contig_1093_1495
Type: CAZyme
Location: 1600677 - 1601855 (+)
Type: CAZyme
Location: 1600677 - 1601855 (+)
Gene ID: C55_contig_1093_1496
Type: CAZyme
Location: 1601866 - 1602579 (+)
Type: CAZyme
Location: 1601866 - 1602579 (+)
Gene ID: C55_contig_1093_1497
Type: pfam
Location: 1602599 - 1604044 (+)
Type: pfam
Location: 1602599 - 1604044 (+)
Gene ID: C55_contig_1093_1498
Type: CAZyme
Location: 1604075 - 1605226 (+)
Type: CAZyme
Location: 1604075 - 1605226 (+)
Gene ID: C55_contig_1093_1499
Type: CAZyme
Location: 1605235 - 1605960 (+)
Type: CAZyme
Location: 1605235 - 1605960 (+)
Gene ID: C55_contig_1093_1500
Type: pfam
Location: 1605980 - 1607086 (+)
Type: pfam
Location: 1605980 - 1607086 (+)
Gene ID: C55_contig_1093_1501
Type: TC
Location: 1607174 - 1608100 (+)
Type: TC
Location: 1607174 - 1608100 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Romboutsia
Species
Romboutsia timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C55_contig_1093_1498 | vegan > omnivore | 3.15630 | 0.00574 |
| C55_contig_1093_1498 | vegetarian > omnivore | 2.08495 | 0.02011 |