Cluster: C55.CMAG_2_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: C55.CMAG_2
- CGC Family ID: CGCFAM_00053
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C55_contig_1093 | C55_contig_1093_1422 | 1522056 | 1522643 | + | 9.A.11.1.1 |
| TC | C55_contig_1093 | C55_contig_1093_1423 | 1522656 | 1523072 | + | 9.A.11.1.1 |
| TC | C55_contig_1093 | C55_contig_1093_1424 | 1523077 | 1523517 | + | 9.A.11.1.1 |
| TC | C55_contig_1093 | C55_contig_1093_1425 | 1523530 | 1524543 | + | 9.A.11.1.1 |
| pfam | C55_contig_1093 | C55_contig_1093_1426 | 1524556 | 1524918 | + | SpoVAC_SpoVAEB |
| CAZyme | C55_contig_1093 | C55_contig_1093_1427 | 1525006 | 1527609 | - | GT51 |
Gene ID: C55_contig_1093_1422
Type: TC
Location: 1522056 - 1522643 (+)
Type: TC
Location: 1522056 - 1522643 (+)
Gene ID: C55_contig_1093_1423
Type: TC
Location: 1522656 - 1523072 (+)
Type: TC
Location: 1522656 - 1523072 (+)
Gene ID: C55_contig_1093_1424
Type: TC
Location: 1523077 - 1523517 (+)
Type: TC
Location: 1523077 - 1523517 (+)
Gene ID: C55_contig_1093_1425
Type: TC
Location: 1523530 - 1524543 (+)
Type: TC
Location: 1523530 - 1524543 (+)
Gene ID: C55_contig_1093_1426
Type: pfam
Location: 1524556 - 1524918 (+)
Type: pfam
Location: 1524556 - 1524918 (+)
Gene ID: C55_contig_1093_1427
Type: CAZyme
Location: 1525006 - 1527609 (-)
Type: CAZyme
Location: 1525006 - 1527609 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Romboutsia
Species
Romboutsia timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C55_contig_1093_1425 | vegan > omnivore | 4.57618 | 0.00574 |
| C55_contig_1093_1425 | vegetarian > omnivore | 3.36702 | 0.02011 |
| C55_contig_1093_1426 | vegan > omnivore | 3.58205 | 0.00574 |
| C55_contig_1093_1427 | vegan > omnivore | 3.78553 | 0.00574 |
| C55_contig_1093_1427 | vegetarian > omnivore | 2.39613 | 0.02011 |