Cluster: C55.CMAG_2_CGC10
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: C55.CMAG_2
- CGC Family ID: CGCFAM_00234
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C55_contig_1093 | C55_contig_1093_809 | 821786 | 822433 | - | 2.A.115.1.2 |
| pfam | C55_contig_1093 | C55_contig_1093_810 | 822601 | 825264 | - | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | tRNA-synt_1g | Val_tRNA-synt_C | tRNA-synt_1_2 |
| CAZyme | C55_contig_1093 | C55_contig_1093_811 | 825699 | 826505 | - | CE4 |
Gene ID: C55_contig_1093_809
Type: TC
Location: 821786 - 822433 (-)
Type: TC
Location: 821786 - 822433 (-)
Gene ID: C55_contig_1093_810
Type: pfam
Location: 822601 - 825264 (-)
Type: pfam
Location: 822601 - 825264 (-)
Gene ID: C55_contig_1093_811
Type: CAZyme
Location: 825699 - 826505 (-)
Type: CAZyme
Location: 825699 - 826505 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Romboutsia
Species
Romboutsia timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C55_contig_1093_811 | vegan > omnivore | 2.82874 | 0.00574 |
| C55_contig_1093_811 | vegetarian > omnivore | 2.99189 | 0.02011 |