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Cluster: C41.bin_11_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC C41_contig_43 C41_contig_43_249 281733 282623 + 3.A.1.1.9
TC C41_contig_43 C41_contig_43_250 282636 283520 + 3.A.1.1.9
TC C41_contig_43 C41_contig_43_251 283537 284142 + 3.A.1.1.9
STP C41_contig_43 C41_contig_43_252 284260 285243 + SBP_bac_1
CAZyme C41_contig_43 C41_contig_43_253 285300 286358 + GH179
pfam C41_contig_43 C41_contig_43_254 286643 287521 + AP_endonuc_2
pfam C41_contig_43 C41_contig_43_255 287603 288523 + AP_endonuc_2
CAZyme C41_contig_43 C41_contig_43_256 288553 289629 + GH179
CAZyme C41_contig_43 C41_contig_43_257 289818 291971 + GH3
CAZyme C41_contig_43 C41_contig_43_258 291995 293380 + GH28
CAZyme C41_contig_43 C41_contig_43_259 293390 294427 + CE1
CAZyme C41_contig_43 C41_contig_43_260 294708 295820 + GH172
NULL(UNKNOWN) C41_contig_43 C41_contig_43_261 295990 296868 - NULL(UNKNOWN)
[View Structural Homologs]
STP C41_contig_43 C41_contig_43_262 297193 297783 + TetR_N
CAZyme C41_contig_43 C41_contig_43_263 297869 299776 + CBM48 | GH13_9
TC C41_contig_43 C41_contig_43_264 300080 301705 + 3.A.1.5.33
TC C41_contig_43 C41_contig_43_265 301815 302765 + 3.A.1.5.20
TC C41_contig_43 C41_contig_43_266 302770 303636 + 3.A.1.5.41
TC C41_contig_43 C41_contig_43_267 303648 304658 + 3.A.1.5.2
TC C41_contig_43 C41_contig_43_268 304660 305637 + 3.A.1.5.20
pfam C41_contig_43 C41_contig_43_269 305662 306939 + SDH_alpha
TC C41_contig_43 C41_contig_43_270 307188 308363 + 9.B.10.1.1
Gene ID: C41_contig_43_249
Type: TC
Location: 281733 - 282623 (+)
Gene ID: C41_contig_43_250
Type: TC
Location: 282636 - 283520 (+)
Gene ID: C41_contig_43_251
Type: TC
Location: 283537 - 284142 (+)
Gene ID: C41_contig_43_252
Type: STP
Location: 284260 - 285243 (+)
Gene ID: C41_contig_43_253
Type: CAZyme
Location: 285300 - 286358 (+)
Gene ID: C41_contig_43_254
Type: pfam
Location: 286643 - 287521 (+)
Gene ID: C41_contig_43_255
Type: pfam
Location: 287603 - 288523 (+)
Gene ID: C41_contig_43_256
Type: CAZyme
Location: 288553 - 289629 (+)
Gene ID: C41_contig_43_257
Type: CAZyme
Location: 289818 - 291971 (+)
Gene ID: C41_contig_43_258
Type: CAZyme
Location: 291995 - 293380 (+)
Gene ID: C41_contig_43_259
Type: CAZyme
Location: 293390 - 294427 (+)
Gene ID: C41_contig_43_260
Type: CAZyme
Location: 294708 - 295820 (+)
Gene ID: C41_contig_43_261
Type:
Location: 295990 - 296868 (-)
Gene ID: C41_contig_43_262
Type: STP
Location: 297193 - 297783 (+)
Gene ID: C41_contig_43_263
Type: CAZyme
Location: 297869 - 299776 (+)
Gene ID: C41_contig_43_264
Type: TC
Location: 300080 - 301705 (+)
Gene ID: C41_contig_43_265
Type: TC
Location: 301815 - 302765 (+)
Gene ID: C41_contig_43_266
Type: TC
Location: 302770 - 303636 (+)
Gene ID: C41_contig_43_267
Type: TC
Location: 303648 - 304658 (+)
Gene ID: C41_contig_43_268
Type: TC
Location: 304660 - 305637 (+)
Gene ID: C41_contig_43_269
Type: pfam
Location: 305662 - 306939 (+)
Gene ID: C41_contig_43_270
Type: TC
Location: 307188 - 308363 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C41_contig_43_250 vegetarian > vegan 1.04929 0.00229
C41_contig_43_251 vegetarian > vegan 1.05948 0.00229
C41_contig_43_254 vegetarian > vegan 1.00573 0.00229
C41_contig_43_259 vegetarian > vegan 1.23614 0.00229
C41_contig_43_262 vegetarian > omnivore 1.04228 0.00782

🧭 Explore Read Mapping of CGC

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