Cluster: C41.bin_11_CGC40
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: C41.bin_11
- CGC Family ID: CGCFAM_03661
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C41_contig_43 | C41_contig_43_2851 | 3170199 | 3171185 | - | 3.A.1.5.13 |
| TC | C41_contig_43 | C41_contig_43_2852 | 3171178 | 3172158 | - | 3.A.1.5.13 |
| TC | C41_contig_43 | C41_contig_43_2853 | 3172164 | 3173000 | - | 3.A.1.5.30 |
| TC | C41_contig_43 | C41_contig_43_2854 | 3173019 | 3174017 | - | 3.A.1.5.13 |
| TC | C41_contig_43 | C41_contig_43_2855 | 3174167 | 3176164 | - | 3.A.1.5.13 |
| TC | C41_contig_43 | C41_contig_43_2856 | 3176612 | 3177964 | - | 2.A.25.1.9 |
| pfam | C41_contig_43 | C41_contig_43_2857 | 3178521 | 3180041 | - | GalP_UDP_transf | GalP_UDP_tr_C |
| CAZyme | C41_contig_43 | C41_contig_43_2858 | 3180038 | 3182077 | - | GH42 |
| CAZyme | C41_contig_43 | C41_contig_43_2859 | 3182172 | 3185210 | - | GH2 |
| TC | C41_contig_43 | C41_contig_43_2860 | 3185332 | 3186138 | - | 3.A.1.1.4 |
| TC | C41_contig_43 | C41_contig_43_2861 | 3186138 | 3187025 | - | 3.A.1.1.4 |
| TC | C41_contig_43 | C41_contig_43_2862 | 3187147 | 3188520 | - | 3.A.1.1.4 |
Gene ID: C41_contig_43_2851
Type: TC
Location: 3170199 - 3171185 (-)
Type: TC
Location: 3170199 - 3171185 (-)
Gene ID: C41_contig_43_2852
Type: TC
Location: 3171178 - 3172158 (-)
Type: TC
Location: 3171178 - 3172158 (-)
Gene ID: C41_contig_43_2853
Type: TC
Location: 3172164 - 3173000 (-)
Type: TC
Location: 3172164 - 3173000 (-)
Gene ID: C41_contig_43_2854
Type: TC
Location: 3173019 - 3174017 (-)
Type: TC
Location: 3173019 - 3174017 (-)
Gene ID: C41_contig_43_2855
Type: TC
Location: 3174167 - 3176164 (-)
Type: TC
Location: 3174167 - 3176164 (-)
Gene ID: C41_contig_43_2856
Type: TC
Location: 3176612 - 3177964 (-)
Type: TC
Location: 3176612 - 3177964 (-)
Gene ID: C41_contig_43_2857
Type: pfam
Location: 3178521 - 3180041 (-)
Type: pfam
Location: 3178521 - 3180041 (-)
Gene ID: C41_contig_43_2858
Type: CAZyme
Location: 3180038 - 3182077 (-)
Type: CAZyme
Location: 3180038 - 3182077 (-)
Gene ID: C41_contig_43_2859
Type: CAZyme
Location: 3182172 - 3185210 (-)
Type: CAZyme
Location: 3182172 - 3185210 (-)
Gene ID: C41_contig_43_2860
Type: TC
Location: 3185332 - 3186138 (-)
Type: TC
Location: 3185332 - 3186138 (-)
Gene ID: C41_contig_43_2861
Type: TC
Location: 3186138 - 3187025 (-)
Type: TC
Location: 3186138 - 3187025 (-)
Gene ID: C41_contig_43_2862
Type: TC
Location: 3187147 - 3188520 (-)
Type: TC
Location: 3187147 - 3188520 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia tarda
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C41_contig_43_2851 | vegan > omnivore | 1.22655 | 0.00924 |
| C41_contig_43_2853 | vegan > omnivore | 1.04620 | 0.00924 |
| C41_contig_43_2858 | vegan > omnivore | 1.23295 | 0.00924 |
| C41_contig_43_2858 | vegetarian > omnivore | 1.07363 | 0.00782 |