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Cluster: C41.bin_11_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme C41_contig_43 C41_contig_43_220 247122 248300 + GT4
TC C41_contig_43 C41_contig_43_221 248345 249358 + 3.A.1.141.1
pfam C41_contig_43 C41_contig_43_222 249361 250149 + ABC2_membrane_6
pfam C41_contig_43 C41_contig_43_223 250162 250965 + ABC2_membrane_6
CAZyme C41_contig_43 C41_contig_43_224 250975 252000 + GT4
NULL(UNKNOWN) C41_contig_43 C41_contig_43_225 252071 252484 + NULL(UNKNOWN)
[View Structural Homologs]
TC C41_contig_43 C41_contig_43_226 252489 253880 - 2.A.66.1.33
TC C41_contig_43 C41_contig_43_227 254281 255486 + 2.A.86.1.8
NULL(UNKNOWN) C41_contig_43 C41_contig_43_228 255506 255832 + NULL(UNKNOWN)
[View Structural Homologs]
TF C41_contig_43 C41_contig_43_229 256141 257163 + LacI
CAZyme C41_contig_43 C41_contig_43_230 257183 260284 + GH2
TC C41_contig_43 C41_contig_43_231 260426 261784 + 2.A.66.1.28
peptidase C41_contig_43 C41_contig_43_232 261811 262851 + M42.UPW
TC C41_contig_43 C41_contig_43_233 262860 263720 + 2.A.7.3.52
TF C41_contig_43 C41_contig_43_234 263881 264870 + LacI
TC C41_contig_43 C41_contig_43_235 265084 266787 + 3.A.1.1.9
Gene ID: C41_contig_43_220
Type: CAZyme
Location: 247122 - 248300 (+)
Gene ID: C41_contig_43_221
Type: TC
Location: 248345 - 249358 (+)
Gene ID: C41_contig_43_222
Type: pfam
Location: 249361 - 250149 (+)
Gene ID: C41_contig_43_223
Type: pfam
Location: 250162 - 250965 (+)
Gene ID: C41_contig_43_224
Type: CAZyme
Location: 250975 - 252000 (+)
Gene ID: C41_contig_43_225
Type:
Location: 252071 - 252484 (+)
Gene ID: C41_contig_43_226
Type: TC
Location: 252489 - 253880 (-)
Gene ID: C41_contig_43_227
Type: TC
Location: 254281 - 255486 (+)
Gene ID: C41_contig_43_228
Type:
Location: 255506 - 255832 (+)
Gene ID: C41_contig_43_229
Type: TF
Location: 256141 - 257163 (+)
Gene ID: C41_contig_43_230
Type: CAZyme
Location: 257183 - 260284 (+)
Gene ID: C41_contig_43_231
Type: TC
Location: 260426 - 261784 (+)
Gene ID: C41_contig_43_232
Type: peptidase
Location: 261811 - 262851 (+)
Gene ID: C41_contig_43_233
Type: TC
Location: 262860 - 263720 (+)
Gene ID: C41_contig_43_234
Type: TF
Location: 263881 - 264870 (+)
Gene ID: C41_contig_43_235
Type: TC
Location: 265084 - 266787 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C41_contig_43_221 vegan > omnivore 1.11537 0.00924
C41_contig_43_222 vegan > omnivore 1.26412 0.00924
C41_contig_43_228 vegan > omnivore 1.78435 0.00924
C41_contig_43_228 vegetarian > omnivore 1.65793 0.00782
C41_contig_43_230 vegan > omnivore 1.25387 0.00924
C41_contig_43_233 vegan > omnivore 1.88331 0.00924
C41_contig_43_233 vegetarian > omnivore 2.09235 0.00782

🧭 Explore Read Mapping of CGC

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