Cluster: C41.bin_11_CGC37
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: C41.bin_11
- CGC Family ID: CGCFAM_03031
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C41_contig_43 | C41_contig_43_2656 | 2960546 | 2961376 | - | 3.A.1.1.36 |
| TC | C41_contig_43 | C41_contig_43_2657 | 2961391 | 2962317 | - | 3.A.1.1.11 |
| STP | C41_contig_43 | C41_contig_43_2658 | 2962334 | 2963632 | - | SBP_bac_1 |
| CAZyme | C41_contig_43 | C41_contig_43_2659 | 2963908 | 2965800 | - | GH129 |
| TF | C41_contig_43 | C41_contig_43_2660 | 2966059 | 2966988 | + | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | C41_contig_43 | C41_contig_43_2661 | 2967427 | 2967882 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C41_contig_43 | C41_contig_43_2662 | 2968197 | 2969627 | - | 3.A.1.121.4 |
| TC | C41_contig_43 | C41_contig_43_2663 | 2969849 | 2971174 | + | 2.A.66.1.13 |
Gene ID: C41_contig_43_2656
Type: TC
Location: 2960546 - 2961376 (-)
Type: TC
Location: 2960546 - 2961376 (-)
Gene ID: C41_contig_43_2657
Type: TC
Location: 2961391 - 2962317 (-)
Type: TC
Location: 2961391 - 2962317 (-)
Gene ID: C41_contig_43_2658
Type: STP
Location: 2962334 - 2963632 (-)
Type: STP
Location: 2962334 - 2963632 (-)
Gene ID: C41_contig_43_2659
Type: CAZyme
Location: 2963908 - 2965800 (-)
Type: CAZyme
Location: 2963908 - 2965800 (-)
Gene ID: C41_contig_43_2660
Type: TF
Location: 2966059 - 2966988 (+)
Type: TF
Location: 2966059 - 2966988 (+)
Gene ID: C41_contig_43_2661
Type:
Location: 2967427 - 2967882 (+)
Type:
Location: 2967427 - 2967882 (+)
Gene ID: C41_contig_43_2662
Type: TC
Location: 2968197 - 2969627 (-)
Type: TC
Location: 2968197 - 2969627 (-)
Gene ID: C41_contig_43_2663
Type: TC
Location: 2969849 - 2971174 (+)
Type: TC
Location: 2969849 - 2971174 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia tarda
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C41_contig_43_2658 | vegan > omnivore | 1.65673 | 0.00924 |
| C41_contig_43_2658 | vegetarian > omnivore | 1.03628 | 0.00782 |