Cluster: C41.bin_11_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: C41.bin_11
- CGC Family ID: CGCFAM_07984
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C41_contig_43 | C41_contig_43_1739 | 1952607 | 1953290 | - | CE4 |
| STP | C41_contig_43 | C41_contig_43_1740 | 1953356 | 1954840 | - | AAA |
| TC | C41_contig_43 | C41_contig_43_1741 | 1955159 | 1956868 | - | 3.A.1.123.2 |
| TC | C41_contig_43 | C41_contig_43_1742 | 1956858 | 1958621 | - | 3.A.1.106.8 |
| TF | C41_contig_43 | C41_contig_43_1743 | 1958584 | 1959027 | - | MarR |
| TC | C41_contig_43 | C41_contig_43_1744 | 1959432 | 1960100 | - | 2.A.38.4.6 |
| TC | C41_contig_43 | C41_contig_43_1745 | 1960144 | 1961529 | - | 2.A.38.4.3 |
Gene ID: C41_contig_43_1739
Type: CAZyme
Location: 1952607 - 1953290 (-)
Type: CAZyme
Location: 1952607 - 1953290 (-)
Gene ID: C41_contig_43_1740
Type: STP
Location: 1953356 - 1954840 (-)
Type: STP
Location: 1953356 - 1954840 (-)
Gene ID: C41_contig_43_1741
Type: TC
Location: 1955159 - 1956868 (-)
Type: TC
Location: 1955159 - 1956868 (-)
Gene ID: C41_contig_43_1742
Type: TC
Location: 1956858 - 1958621 (-)
Type: TC
Location: 1956858 - 1958621 (-)
Gene ID: C41_contig_43_1743
Type: TF
Location: 1958584 - 1959027 (-)
Type: TF
Location: 1958584 - 1959027 (-)
Gene ID: C41_contig_43_1744
Type: TC
Location: 1959432 - 1960100 (-)
Type: TC
Location: 1959432 - 1960100 (-)
Gene ID: C41_contig_43_1745
Type: TC
Location: 1960144 - 1961529 (-)
Type: TC
Location: 1960144 - 1961529 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia tarda
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C41_contig_43_1739 | vegan > omnivore | 1.57271 | 0.00924 |
| C41_contig_43_1739 | vegetarian > omnivore | 1.35721 | 0.00782 |
| C41_contig_43_1743 | vegetarian > omnivore | 1.31570 | 0.00782 |
| C41_contig_43_1745 | vegan > omnivore | 1.51883 | 0.00924 |
| C41_contig_43_1745 | vegetarian > omnivore | 1.73076 | 0.00782 |