Cluster: C41.bin_11_CGC26
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: C41.bin_11
- CGC Family ID: CGCFAM_03659
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C41_contig_43 | C41_contig_43_1542 | 1755361 | 1756698 | + | 2.A.66.1.32 |
| TF | C41_contig_43 | C41_contig_43_1543 | 1756671 | 1757552 | - | HTH_AraC | HTH_AraC |
| CAZyme | C41_contig_43 | C41_contig_43_1544 | 1757981 | 1759531 | + | GH13_44 |
| CAZyme | C41_contig_43 | C41_contig_43_1545 | 1759667 | 1760731 | + | GH179 |
| pfam | C41_contig_43 | C41_contig_43_1546 | 1760813 | 1761691 | + | AP_endonuc_2 |
| pfam | C41_contig_43 | C41_contig_43_1547 | 1761773 | 1762693 | + | AP_endonuc_2 |
| CAZyme | C41_contig_43 | C41_contig_43_1548 | 1762922 | 1763998 | + | GH179 |
Gene ID: C41_contig_43_1542
Type: TC
Location: 1755361 - 1756698 (+)
Type: TC
Location: 1755361 - 1756698 (+)
Gene ID: C41_contig_43_1543
Type: TF
Location: 1756671 - 1757552 (-)
Type: TF
Location: 1756671 - 1757552 (-)
Gene ID: C41_contig_43_1544
Type: CAZyme
Location: 1757981 - 1759531 (+)
Type: CAZyme
Location: 1757981 - 1759531 (+)
Gene ID: C41_contig_43_1545
Type: CAZyme
Location: 1759667 - 1760731 (+)
Type: CAZyme
Location: 1759667 - 1760731 (+)
Gene ID: C41_contig_43_1546
Type: pfam
Location: 1760813 - 1761691 (+)
Type: pfam
Location: 1760813 - 1761691 (+)
Gene ID: C41_contig_43_1547
Type: pfam
Location: 1761773 - 1762693 (+)
Type: pfam
Location: 1761773 - 1762693 (+)
Gene ID: C41_contig_43_1548
Type: CAZyme
Location: 1762922 - 1763998 (+)
Type: CAZyme
Location: 1762922 - 1763998 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia tarda
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.