Cluster: C41.bin_11_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: C41.bin_11
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C41_contig_43 | C41_contig_43_695 | 754022 | 754789 | + | 3.A.1.134.4 |
| TC | C41_contig_43 | C41_contig_43_696 | 754782 | 756779 | + | 3.A.1.134.4 |
| TC | C41_contig_43 | C41_contig_43_697 | 756903 | 758327 | + | 2.A.22.5.3 |
| TF | C41_contig_43 | C41_contig_43_698 | 758523 | 758738 | + | HTH_3 |
| pfam | C41_contig_43 | C41_contig_43_699 | 758728 | 759528 | + | DUF3169 |
| CAZyme | C41_contig_43 | C41_contig_43_700 | 759731 | 761839 | + | GH3 |
Gene ID: C41_contig_43_695
Type: TC
Location: 754022 - 754789 (+)
Type: TC
Location: 754022 - 754789 (+)
Gene ID: C41_contig_43_696
Type: TC
Location: 754782 - 756779 (+)
Type: TC
Location: 754782 - 756779 (+)
Gene ID: C41_contig_43_697
Type: TC
Location: 756903 - 758327 (+)
Type: TC
Location: 756903 - 758327 (+)
Gene ID: C41_contig_43_698
Type: TF
Location: 758523 - 758738 (+)
Type: TF
Location: 758523 - 758738 (+)
Gene ID: C41_contig_43_699
Type: pfam
Location: 758728 - 759528 (+)
Type: pfam
Location: 758728 - 759528 (+)
Gene ID: C41_contig_43_700
Type: CAZyme
Location: 759731 - 761839 (+)
Type: CAZyme
Location: 759731 - 761839 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia tarda
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C41_contig_43_699 | vegan > omnivore | 1.68745 | 0.00924 |
| C41_contig_43_699 | vegetarian > omnivore | 1.29921 | 0.00782 |