Cluster: C34.bin_4_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: C34.bin_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C34_scaffold_1244 | C34_scaffold_1244_357 | 408136 | 409830 | + | GH18 |
| STP | C34_scaffold_1244 | C34_scaffold_1244_358 | 409980 | 410957 | + | PALP |
| CAZyme | C34_scaffold_1244 | C34_scaffold_1244_359 | 411037 | 412023 | + | GT2 |
| pfam | C34_scaffold_1244 | C34_scaffold_1244_360 | 412154 | 413374 | + | GARS_A | ATP-grasp | ATP-grasp_3 | CPSase_L_D2 | Dala_Dala_lig_C | ATP-grasp_4 |
| NULL(UNKNOWN) | C34_scaffold_1244 | C34_scaffold_1244_361 | 413362 | 413775 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C34_scaffold_1244 | C34_scaffold_1244_362 | 413790 | 414125 | + | 2.A.7.33.5 |
| CAZyme | C34_scaffold_1244 | C34_scaffold_1244_363 | 414171 | 415118 | + | CE4 |
Gene ID: C34_scaffold_1244_357
Type: CAZyme
Location: 408136 - 409830 (+)
Type: CAZyme
Location: 408136 - 409830 (+)
Gene ID: C34_scaffold_1244_358
Type: STP
Location: 409980 - 410957 (+)
Type: STP
Location: 409980 - 410957 (+)
Gene ID: C34_scaffold_1244_359
Type: CAZyme
Location: 411037 - 412023 (+)
Type: CAZyme
Location: 411037 - 412023 (+)
Gene ID: C34_scaffold_1244_360
Type: pfam
Location: 412154 - 413374 (+)
Type: pfam
Location: 412154 - 413374 (+)
Gene ID: C34_scaffold_1244_361
Type:
Location: 413362 - 413775 (+)
Type:
Location: 413362 - 413775 (+)
Gene ID: C34_scaffold_1244_362
Type: TC
Location: 413790 - 414125 (+)
Type: TC
Location: 413790 - 414125 (+)
Gene ID: C34_scaffold_1244_363
Type: CAZyme
Location: 414171 - 415118 (+)
Type: CAZyme
Location: 414171 - 415118 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_scaffold_1244_358 | vegetarian > omnivore | 1.12952 | 0.01372 |
| C34_scaffold_1244_358 | vegetarian > vegan | 1.00268 | 0.00450 |
| C34_scaffold_1244_363 | vegetarian > omnivore | 1.00437 | 0.01372 |