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Cluster: C34.bin_4_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC C34_scaffold_1244 C34_scaffold_1244_334 364230 365756 + 3.A.1.2.3
TC C34_scaffold_1244 C34_scaffold_1244_335 365753 366769 + 3.A.1.2.19
STP C34_scaffold_1244 C34_scaffold_1244_336 366941 367882 + Peripla_BP_1
TF C34_scaffold_1244 C34_scaffold_1244_337 368740 370329 + HTH_AraC | HTH_AraC
TC C34_scaffold_1244 C34_scaffold_1244_338 370334 371389 + 8.A.59.2.1
TC C34_scaffold_1244 C34_scaffold_1244_339 371386 372852 + 3.A.1.2.21
NULL(UNKNOWN) C34_scaffold_1244 C34_scaffold_1244_340 373042 373743 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme C34_scaffold_1244 C34_scaffold_1244_341 373979 375022 + GH109
pfam C34_scaffold_1244 C34_scaffold_1244_342 375019 375849 + AP_endonuc_2
CAZyme C34_scaffold_1244 C34_scaffold_1244_343 375958 377835 + GH129
TC C34_scaffold_1244 C34_scaffold_1244_344 378058 379317 + 3.A.1.1.40
TC C34_scaffold_1244 C34_scaffold_1244_345 379472 380377 + 3.A.1.1.11
TC C34_scaffold_1244 C34_scaffold_1244_346 380463 381287 + 3.A.1.1.36
peptidase C34_scaffold_1244 C34_scaffold_1244_347 381368 382249 + S12.UPW
TC C34_scaffold_1244 C34_scaffold_1244_348 382387 383226 + 1.A.23.2.1
Gene ID: C34_scaffold_1244_334
Type: TC
Location: 364230 - 365756 (+)
Gene ID: C34_scaffold_1244_335
Type: TC
Location: 365753 - 366769 (+)
Gene ID: C34_scaffold_1244_336
Type: STP
Location: 366941 - 367882 (+)
Gene ID: C34_scaffold_1244_337
Type: TF
Location: 368740 - 370329 (+)
Gene ID: C34_scaffold_1244_338
Type: TC
Location: 370334 - 371389 (+)
Gene ID: C34_scaffold_1244_339
Type: TC
Location: 371386 - 372852 (+)
Gene ID: C34_scaffold_1244_340
Type:
Location: 373042 - 373743 (+)
Gene ID: C34_scaffold_1244_341
Type: CAZyme
Location: 373979 - 375022 (+)
Gene ID: C34_scaffold_1244_342
Type: pfam
Location: 375019 - 375849 (+)
Gene ID: C34_scaffold_1244_343
Type: CAZyme
Location: 375958 - 377835 (+)
Gene ID: C34_scaffold_1244_344
Type: TC
Location: 378058 - 379317 (+)
Gene ID: C34_scaffold_1244_345
Type: TC
Location: 379472 - 380377 (+)
Gene ID: C34_scaffold_1244_346
Type: TC
Location: 380463 - 381287 (+)
Gene ID: C34_scaffold_1244_347
Type: peptidase
Location: 381368 - 382249 (+)
Gene ID: C34_scaffold_1244_348
Type: TC
Location: 382387 - 383226 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C34_scaffold_1244_340 vegetarian > vegan 1.66574 0.00450
C34_scaffold_1244_340 vegetarian > omnivore 1.64045 0.01372
C34_scaffold_1244_341 vegetarian > omnivore 1.18235 0.01372
C34_scaffold_1244_341 vegetarian > vegan 1.01861 0.00450
C34_scaffold_1244_342 vegetarian > omnivore 1.03228 0.01372
C34_scaffold_1244_343 vegetarian > omnivore 1.05829 0.01372
C34_scaffold_1244_345 vegetarian > vegan 1.30546 0.00450
C34_scaffold_1244_345 vegetarian > omnivore 4.82591 0.01372
C34_scaffold_1244_347 vegetarian > omnivore 1.28966 0.01372
C34_scaffold_1244_348 vegetarian > omnivore 2.34180 0.01372

🧭 Explore Read Mapping of CGC

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