Cluster: C34.bin_4_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: C34.bin_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C34_scaffold_1244 | C34_scaffold_1244_274 | 300187 | 301155 | - | 2.A.7.3.52 |
| TF | C34_scaffold_1244 | C34_scaffold_1244_275 | 301354 | 302241 | + | HTH_1 |
| CAZyme | C34_scaffold_1244 | C34_scaffold_1244_276 | 302452 | 304863 | - | GH3 |
| TF | C34_scaffold_1244 | C34_scaffold_1244_277 | 305039 | 305881 | + | HTH_AraC |
| TC | C34_scaffold_1244 | C34_scaffold_1244_278 | 306001 | 306759 | + | 2.A.79.1.4 |
Gene ID: C34_scaffold_1244_274
Type: TC
Location: 300187 - 301155 (-)
Type: TC
Location: 300187 - 301155 (-)
Gene ID: C34_scaffold_1244_275
Type: TF
Location: 301354 - 302241 (+)
Type: TF
Location: 301354 - 302241 (+)
Gene ID: C34_scaffold_1244_276
Type: CAZyme
Location: 302452 - 304863 (-)
Type: CAZyme
Location: 302452 - 304863 (-)
Gene ID: C34_scaffold_1244_277
Type: TF
Location: 305039 - 305881 (+)
Type: TF
Location: 305039 - 305881 (+)
Gene ID: C34_scaffold_1244_278
Type: TC
Location: 306001 - 306759 (+)
Type: TC
Location: 306001 - 306759 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_scaffold_1244_274 | vegetarian > omnivore | 1.30571 | 0.01372 |
| C34_scaffold_1244_277 | vegetarian > omnivore | 1.46990 | 0.01372 |
| C34_scaffold_1244_277 | vegetarian > vegan | 1.36852 | 0.00450 |