Cluster: C34.bin_4_CGC48
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: C34.bin_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C34_contig_1470 | C34_contig_1470_94 | 108187 | 110112 | - | 3.A.1.5.41 |
| TC | C34_contig_1470 | C34_contig_1470_95 | 110275 | 111237 | - | 3.A.1.5.20 |
| TC | C34_contig_1470 | C34_contig_1470_96 | 111234 | 112250 | - | 3.A.1.5.2 |
| TC | C34_contig_1470 | C34_contig_1470_97 | 112256 | 113344 | - | 3.A.1.5.2 |
| TC | C34_contig_1470 | C34_contig_1470_98 | 113356 | 114267 | - | 3.A.1.5.2 |
| pfam | C34_contig_1470 | C34_contig_1470_99 | 114436 | 116367 | - | RelA_SpoT |
| CAZyme | C34_contig_1470 | C34_contig_1470_100 | 116724 | 119132 | - | GH3 |
| STP | C34_contig_1470 | C34_contig_1470_101 | 119233 | 120198 | - | Peripla_BP_1 |
| TC | C34_contig_1470 | C34_contig_1470_102 | 120300 | 121256 | - | 3.A.1.2.13 |
| TC | C34_contig_1470 | C34_contig_1470_103 | 121258 | 122751 | - | 3.A.1.2.20 |
Gene ID: C34_contig_1470_94
Type: TC
Location: 108187 - 110112 (-)
Type: TC
Location: 108187 - 110112 (-)
Gene ID: C34_contig_1470_95
Type: TC
Location: 110275 - 111237 (-)
Type: TC
Location: 110275 - 111237 (-)
Gene ID: C34_contig_1470_96
Type: TC
Location: 111234 - 112250 (-)
Type: TC
Location: 111234 - 112250 (-)
Gene ID: C34_contig_1470_97
Type: TC
Location: 112256 - 113344 (-)
Type: TC
Location: 112256 - 113344 (-)
Gene ID: C34_contig_1470_98
Type: TC
Location: 113356 - 114267 (-)
Type: TC
Location: 113356 - 114267 (-)
Gene ID: C34_contig_1470_99
Type: pfam
Location: 114436 - 116367 (-)
Type: pfam
Location: 114436 - 116367 (-)
Gene ID: C34_contig_1470_100
Type: CAZyme
Location: 116724 - 119132 (-)
Type: CAZyme
Location: 116724 - 119132 (-)
Gene ID: C34_contig_1470_101
Type: STP
Location: 119233 - 120198 (-)
Type: STP
Location: 119233 - 120198 (-)
Gene ID: C34_contig_1470_102
Type: TC
Location: 120300 - 121256 (-)
Type: TC
Location: 120300 - 121256 (-)
Gene ID: C34_contig_1470_103
Type: TC
Location: 121258 - 122751 (-)
Type: TC
Location: 121258 - 122751 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_1470_94 | vegetarian > vegan | 1.36212 | 0.00450 |
| C34_contig_1470_97 | vegetarian > omnivore | 1.02193 | 0.01372 |
| C34_contig_1470_98 | vegetarian > vegan | 1.27965 | 0.00450 |
| C34_contig_1470_101 | vegetarian > omnivore | 1.38669 | 0.01372 |