Cluster: C34.bin_4_CGC44
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: C34.bin_4
- CGC Family ID: CGCFAM_00330
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C34_contig_2079 | C34_contig_2079_231 | 265879 | 266922 | + | 3.A.1.135.7 |
| NULL(UNKNOWN) | C34_contig_2079 | C34_contig_2079_232 | 266919 | 267095 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C34_contig_2079 | C34_contig_2079_233 | 267336 | 267608 | + | ABC_membrane |
| TC | C34_contig_2079 | C34_contig_2079_234 | 267598 | 268671 | + | 3.A.1.135.5 |
| pfam | C34_contig_2079 | C34_contig_2079_235 | 268677 | 269201 | + | MatE |
| pfam | C34_contig_2079 | C34_contig_2079_236 | 269405 | 270016 | + | MatE |
| CAZyme | C34_contig_2079 | C34_contig_2079_237 | 270271 | 273021 | + | GH43_4 |
| CAZyme | C34_contig_2079 | C34_contig_2079_238 | 273246 | 274400 | + | CE9 |
Gene ID: C34_contig_2079_231
Type: TC
Location: 265879 - 266922 (+)
Type: TC
Location: 265879 - 266922 (+)
Gene ID: C34_contig_2079_232
Type:
Location: 266919 - 267095 (+)
Type:
Location: 266919 - 267095 (+)
Gene ID: C34_contig_2079_233
Type: pfam
Location: 267336 - 267608 (+)
Type: pfam
Location: 267336 - 267608 (+)
Gene ID: C34_contig_2079_234
Type: TC
Location: 267598 - 268671 (+)
Type: TC
Location: 267598 - 268671 (+)
Gene ID: C34_contig_2079_235
Type: pfam
Location: 268677 - 269201 (+)
Type: pfam
Location: 268677 - 269201 (+)
Gene ID: C34_contig_2079_236
Type: pfam
Location: 269405 - 270016 (+)
Type: pfam
Location: 269405 - 270016 (+)
Gene ID: C34_contig_2079_237
Type: CAZyme
Location: 270271 - 273021 (+)
Type: CAZyme
Location: 270271 - 273021 (+)
Gene ID: C34_contig_2079_238
Type: CAZyme
Location: 273246 - 274400 (+)
Type: CAZyme
Location: 273246 - 274400 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_2079_231 | vegetarian > omnivore | 1.07272 | 0.01372 |
| C34_contig_2079_232 | vegetarian > vegan | 1.18976 | 0.00450 |
| C34_contig_2079_238 | vegetarian > omnivore | 1.11870 | 0.01372 |
| C34_contig_2079_238 | vegetarian > vegan | 1.07640 | 0.00450 |