Cluster: C34.bin_4_CGC42
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: C34.bin_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C34_contig_2079 | C34_contig_2079_32 | 44160 | 45761 | + | 3.D.10.1.1 |
| pfam | C34_contig_2079 | C34_contig_2079_33 | 45899 | 46741 | + | Fumerase |
| pfam | C34_contig_2079 | C34_contig_2079_34 | 46743 | 47318 | + | Fumerase_C |
| TC | C34_contig_2079 | C34_contig_2079_35 | 47470 | 49374 | - | 9.B.34.1.3 |
| pfam | C34_contig_2079 | C34_contig_2079_36 | 49593 | 50705 | + | ArgZ-like_C_2nd |
| TC | C34_contig_2079 | C34_contig_2079_37 | 51085 | 52689 | + | 3.A.1.5.27 |
| TC | C34_contig_2079 | C34_contig_2079_38 | 52858 | 53781 | + | 3.A.1.5.11 |
| TC | C34_contig_2079 | C34_contig_2079_39 | 53784 | 54695 | + | 3.A.1.5.20 |
| TC | C34_contig_2079 | C34_contig_2079_40 | 54708 | 55694 | + | 3.A.1.5.20 |
| TC | C34_contig_2079 | C34_contig_2079_41 | 55687 | 56646 | + | 3.A.1.5.29 |
| CAZyme | C34_contig_2079 | C34_contig_2079_42 | 56995 | 57789 | + | CE1 |
Gene ID: C34_contig_2079_32
Type: TC
Location: 44160 - 45761 (+)
Type: TC
Location: 44160 - 45761 (+)
Gene ID: C34_contig_2079_33
Type: pfam
Location: 45899 - 46741 (+)
Type: pfam
Location: 45899 - 46741 (+)
Gene ID: C34_contig_2079_34
Type: pfam
Location: 46743 - 47318 (+)
Type: pfam
Location: 46743 - 47318 (+)
Gene ID: C34_contig_2079_35
Type: TC
Location: 47470 - 49374 (-)
Type: TC
Location: 47470 - 49374 (-)
Gene ID: C34_contig_2079_36
Type: pfam
Location: 49593 - 50705 (+)
Type: pfam
Location: 49593 - 50705 (+)
Gene ID: C34_contig_2079_37
Type: TC
Location: 51085 - 52689 (+)
Type: TC
Location: 51085 - 52689 (+)
Gene ID: C34_contig_2079_38
Type: TC
Location: 52858 - 53781 (+)
Type: TC
Location: 52858 - 53781 (+)
Gene ID: C34_contig_2079_39
Type: TC
Location: 53784 - 54695 (+)
Type: TC
Location: 53784 - 54695 (+)
Gene ID: C34_contig_2079_40
Type: TC
Location: 54708 - 55694 (+)
Type: TC
Location: 54708 - 55694 (+)
Gene ID: C34_contig_2079_41
Type: TC
Location: 55687 - 56646 (+)
Type: TC
Location: 55687 - 56646 (+)
Gene ID: C34_contig_2079_42
Type: CAZyme
Location: 56995 - 57789 (+)
Type: CAZyme
Location: 56995 - 57789 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_2079_36 | vegetarian > omnivore | 1.04868 | 0.01372 |
| C34_contig_2079_37 | vegetarian > omnivore | 1.07964 | 0.01372 |
| C34_contig_2079_38 | vegetarian > omnivore | 1.96949 | 0.01372 |
| C34_contig_2079_38 | vegetarian > vegan | 1.68149 | 0.00450 |
| C34_contig_2079_39 | vegetarian > omnivore | 1.91716 | 0.00460 |
| C34_contig_2079_39 | vegetarian > vegan | 1.52958 | 0.00450 |