Cluster: C34.bin_4_CGC40
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: C34.bin_4
- CGC Family ID: CGCFAM_06835
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C34_contig_2004 | C34_contig_2004_1196 | 1438039 | 1440408 | - | 8.A.59.4.1 |
| CAZyme | C34_contig_2004 | C34_contig_2004_1197 | 1440668 | 1442692 | - | GH42 |
| TF | C34_contig_2004 | C34_contig_2004_1198 | 1443131 | 1444144 | - | LacI |
| pfam | C34_contig_2004 | C34_contig_2004_1199 | 1444435 | 1444767 | - | AzlD |
| TC | C34_contig_2004 | C34_contig_2004_1200 | 1444770 | 1445465 | - | 2.A.78.1.1 |
Gene ID: C34_contig_2004_1196
Type: TC
Location: 1438039 - 1440408 (-)
Type: TC
Location: 1438039 - 1440408 (-)
Gene ID: C34_contig_2004_1197
Type: CAZyme
Location: 1440668 - 1442692 (-)
Type: CAZyme
Location: 1440668 - 1442692 (-)
Gene ID: C34_contig_2004_1198
Type: TF
Location: 1443131 - 1444144 (-)
Type: TF
Location: 1443131 - 1444144 (-)
Gene ID: C34_contig_2004_1199
Type: pfam
Location: 1444435 - 1444767 (-)
Type: pfam
Location: 1444435 - 1444767 (-)
Gene ID: C34_contig_2004_1200
Type: TC
Location: 1444770 - 1445465 (-)
Type: TC
Location: 1444770 - 1445465 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_2004_1198 | vegan > omnivore | 3.89108 | 0.01604 |
| C34_contig_2004_1198 | vegetarian > omnivore | 3.73798 | 0.01372 |