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Cluster: C34.bin_4_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC C34_contig_2004 C34_contig_2004_686 842439 843728 + 3.A.1.1.4
TC C34_contig_2004 C34_contig_2004_687 843896 844774 + 3.A.1.1.4
TC C34_contig_2004 C34_contig_2004_688 844771 845577 + 3.A.1.1.4
TC C34_contig_2004 C34_contig_2004_689 845767 847203 + 3.B.1.1.2
pfam C34_contig_2004 C34_contig_2004_690 847218 848150 + OAD_gamma
TC C34_contig_2004 C34_contig_2004_691 848169 848540 + 3.B.1.1.2
TC C34_contig_2004 C34_contig_2004_692 848609 849766 + 3.B.1.1.3
TC C34_contig_2004 C34_contig_2004_693 849880 851292 + 3.B.1.1.6
pfam C34_contig_2004 C34_contig_2004_694 851545 852351 + TPK_catalytic | TPK_B1_binding
NULL(UNKNOWN) C34_contig_2004 C34_contig_2004_695 852355 852753 + NULL(UNKNOWN)
[View Structural Homologs]
TC C34_contig_2004 C34_contig_2004_696 852863 853759 + 3.A.1.3.2
TC C34_contig_2004 C34_contig_2004_697 853997 854782 + 3.A.1.3.15
TC C34_contig_2004 C34_contig_2004_698 854766 855542 + 3.A.1.3.25
peptidase C34_contig_2004 C34_contig_2004_699 855892 857334 + M20.UND
CAZyme C34_contig_2004 C34_contig_2004_700 857504 858853 + GH25
Gene ID: C34_contig_2004_686
Type: TC
Location: 842439 - 843728 (+)
Gene ID: C34_contig_2004_687
Type: TC
Location: 843896 - 844774 (+)
Gene ID: C34_contig_2004_688
Type: TC
Location: 844771 - 845577 (+)
Gene ID: C34_contig_2004_689
Type: TC
Location: 845767 - 847203 (+)
Gene ID: C34_contig_2004_690
Type: pfam
Location: 847218 - 848150 (+)
Gene ID: C34_contig_2004_691
Type: TC
Location: 848169 - 848540 (+)
Gene ID: C34_contig_2004_692
Type: TC
Location: 848609 - 849766 (+)
Gene ID: C34_contig_2004_693
Type: TC
Location: 849880 - 851292 (+)
Gene ID: C34_contig_2004_694
Type: pfam
Location: 851545 - 852351 (+)
Gene ID: C34_contig_2004_695
Type:
Location: 852355 - 852753 (+)
Gene ID: C34_contig_2004_696
Type: TC
Location: 852863 - 853759 (+)
Gene ID: C34_contig_2004_697
Type: TC
Location: 853997 - 854782 (+)
Gene ID: C34_contig_2004_698
Type: TC
Location: 854766 - 855542 (+)
Gene ID: C34_contig_2004_699
Type: peptidase
Location: 855892 - 857334 (+)
Gene ID: C34_contig_2004_700
Type: CAZyme
Location: 857504 - 858853 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C34_contig_2004_688 vegetarian > omnivore 1.17685 0.00460
C34_contig_2004_696 vegetarian > vegan 1.07215 0.00450
C34_contig_2004_700 vegetarian > omnivore 1.12238 0.01372

🧭 Explore Read Mapping of CGC

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