Cluster: C34.bin_4_CGC33
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: C34.bin_4
- CGC Family ID: CGCFAM_06493
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C34_contig_2004 | C34_contig_2004_482 | 595829 | 596788 | + | GH43_26 |
| TF | C34_contig_2004 | C34_contig_2004_483 | 596968 | 597900 | - | MarR |
| TC | C34_contig_2004 | C34_contig_2004_484 | 598333 | 599691 | + | 3.A.1.1.34 |
| TC | C34_contig_2004 | C34_contig_2004_485 | 599842 | 600750 | + | 3.A.1.1.34 |
| TC | C34_contig_2004 | C34_contig_2004_486 | 600755 | 601654 | + | 3.A.1.1.34 |
| CAZyme | C34_contig_2004 | C34_contig_2004_487 | 602003 | 603508 | + | GH51_1 |
| pfam | C34_contig_2004 | C34_contig_2004_488 | 603612 | 603968 | + | DUF6171 |
| CAZyme | C34_contig_2004 | C34_contig_2004_489 | 604118 | 605635 | + | GH51_1 |
| pfam | C34_contig_2004 | C34_contig_2004_490 | 606067 | 606804 | + | Glucosamine_iso |
| CAZyme | C34_contig_2004 | C34_contig_2004_491 | 607036 | 609471 | - | GH94 |
| NULL(UNKNOWN) | C34_contig_2004 | C34_contig_2004_492 | 609748 | 611043 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C34_contig_2004 | C34_contig_2004_493 | 611061 | 612587 | - | 9.B.34.1.4 |
Gene ID: C34_contig_2004_482
Type: CAZyme
Location: 595829 - 596788 (+)
Type: CAZyme
Location: 595829 - 596788 (+)
Gene ID: C34_contig_2004_483
Type: TF
Location: 596968 - 597900 (-)
Type: TF
Location: 596968 - 597900 (-)
Gene ID: C34_contig_2004_484
Type: TC
Location: 598333 - 599691 (+)
Type: TC
Location: 598333 - 599691 (+)
Gene ID: C34_contig_2004_485
Type: TC
Location: 599842 - 600750 (+)
Type: TC
Location: 599842 - 600750 (+)
Gene ID: C34_contig_2004_486
Type: TC
Location: 600755 - 601654 (+)
Type: TC
Location: 600755 - 601654 (+)
Gene ID: C34_contig_2004_487
Type: CAZyme
Location: 602003 - 603508 (+)
Type: CAZyme
Location: 602003 - 603508 (+)
Gene ID: C34_contig_2004_488
Type: pfam
Location: 603612 - 603968 (+)
Type: pfam
Location: 603612 - 603968 (+)
Gene ID: C34_contig_2004_489
Type: CAZyme
Location: 604118 - 605635 (+)
Type: CAZyme
Location: 604118 - 605635 (+)
Gene ID: C34_contig_2004_490
Type: pfam
Location: 606067 - 606804 (+)
Type: pfam
Location: 606067 - 606804 (+)
Gene ID: C34_contig_2004_491
Type: CAZyme
Location: 607036 - 609471 (-)
Type: CAZyme
Location: 607036 - 609471 (-)
Gene ID: C34_contig_2004_492
Type:
Location: 609748 - 611043 (-)
Type:
Location: 609748 - 611043 (-)
Gene ID: C34_contig_2004_493
Type: TC
Location: 611061 - 612587 (-)
Type: TC
Location: 611061 - 612587 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_2004_486 | vegetarian > omnivore | 1.05238 | 0.01372 |
| C34_contig_2004_492 | vegetarian > omnivore | 1.49082 | 0.01372 |
| C34_contig_2004_492 | vegetarian > vegan | 1.24825 | 0.00450 |