Cluster: C34.bin_4_CGC20
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: C34.bin_4
- CGC Family ID: CGCFAM_06491
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C34_contig_1450 | C34_contig_1450_390 | 423882 | 425264 | - | 2.A.66.1.32 |
| pfam | C34_contig_1450 | C34_contig_1450_391 | 426027 | 427250 | + | tRNA-synt_1b | S4 | SYY_C-terminal |
| CAZyme | C34_contig_1450 | C34_contig_1450_392 | 427530 | 428363 | + | CE4 |
| STP | C34_contig_1450 | C34_contig_1450_393 | 428667 | 429995 | + | AAA |
| TC | C34_contig_1450 | C34_contig_1450_394 | 429992 | 431146 | + | 2.A.86.1.8 |
| TC | C34_contig_1450 | C34_contig_1450_395 | 431658 | 432236 | + | 2.A.107.1.2 |
| STP | C34_contig_1450 | C34_contig_1450_396 | 432585 | 433121 | + | TetR_N |
| NULL(UNKNOWN) | C34_contig_1450 | C34_contig_1450_397 | 433487 | 433975 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C34_contig_1450 | C34_contig_1450_398 | 433972 | 435801 | + | 3.A.16.1.1 |
Gene ID: C34_contig_1450_390
Type: TC
Location: 423882 - 425264 (-)
Type: TC
Location: 423882 - 425264 (-)
Gene ID: C34_contig_1450_391
Type: pfam
Location: 426027 - 427250 (+)
Type: pfam
Location: 426027 - 427250 (+)
Gene ID: C34_contig_1450_392
Type: CAZyme
Location: 427530 - 428363 (+)
Type: CAZyme
Location: 427530 - 428363 (+)
Gene ID: C34_contig_1450_393
Type: STP
Location: 428667 - 429995 (+)
Type: STP
Location: 428667 - 429995 (+)
Gene ID: C34_contig_1450_394
Type: TC
Location: 429992 - 431146 (+)
Type: TC
Location: 429992 - 431146 (+)
Gene ID: C34_contig_1450_395
Type: TC
Location: 431658 - 432236 (+)
Type: TC
Location: 431658 - 432236 (+)
Gene ID: C34_contig_1450_396
Type: STP
Location: 432585 - 433121 (+)
Type: STP
Location: 432585 - 433121 (+)
Gene ID: C34_contig_1450_397
Type:
Location: 433487 - 433975 (+)
Type:
Location: 433487 - 433975 (+)
Gene ID: C34_contig_1450_398
Type: TC
Location: 433972 - 435801 (+)
Type: TC
Location: 433972 - 435801 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_1450_392 | vegetarian > vegan | 1.31319 | 0.00450 |
| C34_contig_1450_395 | vegetarian > omnivore | 1.36024 | 0.01372 |
| C34_contig_1450_395 | vegetarian > vegan | 1.57740 | 0.00450 |
| C34_contig_1450_396 | vegetarian > omnivore | 1.27420 | 0.01372 |
| C34_contig_1450_396 | vegetarian > vegan | 1.27301 | 0.00450 |
| C34_contig_1450_397 | vegetarian > omnivore | 1.44540 | 0.01372 |
| C34_contig_1450_397 | vegetarian > vegan | 1.62354 | 0.00450 |