Cluster: C34.bin_4_CGC17
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: C34.bin_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C34_contig_1450 | C34_contig_1450_284 | 311957 | 314032 | + | GH42 |
| TF | C34_contig_1450 | C34_contig_1450_285 | 314004 | 314948 | - | HTH_5 |
| TC | C34_contig_1450 | C34_contig_1450_286 | 315485 | 316729 | + | 3.A.1.1.44 |
| TC | C34_contig_1450 | C34_contig_1450_287 | 316852 | 318201 | + | 3.A.1.1.33 |
| TC | C34_contig_1450 | C34_contig_1450_288 | 318214 | 319092 | + | 3.A.1.1.36 |
| CAZyme | C34_contig_1450 | C34_contig_1450_289 | 319162 | 320952 | + | GH2 |
| TF | C34_contig_1450 | C34_contig_1450_290 | 321044 | 322048 | - | LacI |
| STP | C34_contig_1450 | C34_contig_1450_291 | 322740 | 323669 | + | Peripla_BP_1 |
| TC | C34_contig_1450 | C34_contig_1450_292 | 324188 | 325675 | + | 3.A.1.2.20 |
| TC | C34_contig_1450 | C34_contig_1450_293 | 325699 | 326670 | + | 3.A.1.2.1 |
| CAZyme | C34_contig_1450 | C34_contig_1450_294 | 326727 | 327560 | + | CE1 |
Gene ID: C34_contig_1450_284
Type: CAZyme
Location: 311957 - 314032 (+)
Type: CAZyme
Location: 311957 - 314032 (+)
Gene ID: C34_contig_1450_285
Type: TF
Location: 314004 - 314948 (-)
Type: TF
Location: 314004 - 314948 (-)
Gene ID: C34_contig_1450_286
Type: TC
Location: 315485 - 316729 (+)
Type: TC
Location: 315485 - 316729 (+)
Gene ID: C34_contig_1450_287
Type: TC
Location: 316852 - 318201 (+)
Type: TC
Location: 316852 - 318201 (+)
Gene ID: C34_contig_1450_288
Type: TC
Location: 318214 - 319092 (+)
Type: TC
Location: 318214 - 319092 (+)
Gene ID: C34_contig_1450_289
Type: CAZyme
Location: 319162 - 320952 (+)
Type: CAZyme
Location: 319162 - 320952 (+)
Gene ID: C34_contig_1450_290
Type: TF
Location: 321044 - 322048 (-)
Type: TF
Location: 321044 - 322048 (-)
Gene ID: C34_contig_1450_291
Type: STP
Location: 322740 - 323669 (+)
Type: STP
Location: 322740 - 323669 (+)
Gene ID: C34_contig_1450_292
Type: TC
Location: 324188 - 325675 (+)
Type: TC
Location: 324188 - 325675 (+)
Gene ID: C34_contig_1450_293
Type: TC
Location: 325699 - 326670 (+)
Type: TC
Location: 325699 - 326670 (+)
Gene ID: C34_contig_1450_294
Type: CAZyme
Location: 326727 - 327560 (+)
Type: CAZyme
Location: 326727 - 327560 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_1450_286 | vegetarian > omnivore | 1.32541 | 0.01372 |
| C34_contig_1450_287 | vegetarian > omnivore | 1.00678 | 0.01372 |
| C34_contig_1450_287 | vegetarian > vegan | 1.49734 | 0.00450 |
| C34_contig_1450_288 | vegetarian > vegan | 1.34381 | 0.00450 |