Cluster: C34.bin_4_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: C34.bin_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C34_contig_1450 | C34_contig_1450_232 | 259922 | 260941 | + | 3.A.1.14.11 |
| TC | C34_contig_1450 | C34_contig_1450_233 | 260935 | 261705 | + | 3.A.1.6.5 |
| STP | C34_contig_1450 | C34_contig_1450_234 | 261717 | 262784 | + | Peripla_BP_2 |
| CAZyme | C34_contig_1450 | C34_contig_1450_235 | 262885 | 265017 | - | GH13_11 |
| TF | C34_contig_1450 | C34_contig_1450_236 | 265350 | 265724 | + | GntR |
| TC | C34_contig_1450 | C34_contig_1450_237 | 266077 | 266952 | + | 3.A.1.147.8 |
Gene ID: C34_contig_1450_232
Type: TC
Location: 259922 - 260941 (+)
Type: TC
Location: 259922 - 260941 (+)
Gene ID: C34_contig_1450_233
Type: TC
Location: 260935 - 261705 (+)
Type: TC
Location: 260935 - 261705 (+)
Gene ID: C34_contig_1450_234
Type: STP
Location: 261717 - 262784 (+)
Type: STP
Location: 261717 - 262784 (+)
Gene ID: C34_contig_1450_235
Type: CAZyme
Location: 262885 - 265017 (-)
Type: CAZyme
Location: 262885 - 265017 (-)
Gene ID: C34_contig_1450_236
Type: TF
Location: 265350 - 265724 (+)
Type: TF
Location: 265350 - 265724 (+)
Gene ID: C34_contig_1450_237
Type: TC
Location: 266077 - 266952 (+)
Type: TC
Location: 266077 - 266952 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_1450_237 | vegetarian > omnivore | 2.05251 | 0.01372 |
| C34_contig_1450_237 | vegetarian > vegan | 1.08352 | 0.00450 |