Cluster: C34.bin_4_CGC13
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: C34.bin_4
- CGC Family ID: CGCFAM_00046
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C34_contig_1450 | C34_contig_1450_100 | 106612 | 107868 | + | 3.A.1.1.40 |
| TC | C34_contig_1450 | C34_contig_1450_101 | 108084 | 108986 | + | 3.A.1.1.20 |
| TC | C34_contig_1450 | C34_contig_1450_102 | 108983 | 109813 | + | 3.A.1.1.36 |
| CAZyme | C34_contig_1450 | C34_contig_1450_103 | 109979 | 111487 | + | GH51_1 |
| TF | C34_contig_1450 | C34_contig_1450_104 | 111770 | 112813 | + | LacI |
| pfam | C34_contig_1450 | C34_contig_1450_105 | 113308 | 114270 | + | ATLF |
| TC | C34_contig_1450 | C34_contig_1450_106 | 114413 | 115195 | - | 9.B.28.1.2 |
| pfam | C34_contig_1450 | C34_contig_1450_107 | 115471 | 118614 | + | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | DUF5915 |
| CAZyme | C34_contig_1450 | C34_contig_1450_108 | 118693 | 121173 | + | GT35 |
Gene ID: C34_contig_1450_100
Type: TC
Location: 106612 - 107868 (+)
Type: TC
Location: 106612 - 107868 (+)
Gene ID: C34_contig_1450_101
Type: TC
Location: 108084 - 108986 (+)
Type: TC
Location: 108084 - 108986 (+)
Gene ID: C34_contig_1450_102
Type: TC
Location: 108983 - 109813 (+)
Type: TC
Location: 108983 - 109813 (+)
Gene ID: C34_contig_1450_103
Type: CAZyme
Location: 109979 - 111487 (+)
Type: CAZyme
Location: 109979 - 111487 (+)
Gene ID: C34_contig_1450_104
Type: TF
Location: 111770 - 112813 (+)
Type: TF
Location: 111770 - 112813 (+)
Gene ID: C34_contig_1450_105
Type: pfam
Location: 113308 - 114270 (+)
Type: pfam
Location: 113308 - 114270 (+)
Gene ID: C34_contig_1450_106
Type: TC
Location: 114413 - 115195 (-)
Type: TC
Location: 114413 - 115195 (-)
Gene ID: C34_contig_1450_107
Type: pfam
Location: 115471 - 118614 (+)
Type: pfam
Location: 115471 - 118614 (+)
Gene ID: C34_contig_1450_108
Type: CAZyme
Location: 118693 - 121173 (+)
Type: CAZyme
Location: 118693 - 121173 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_1450_100 | vegetarian > vegan | 1.66908 | 0.00450 |
| C34_contig_1450_101 | vegetarian > vegan | 1.09068 | 0.00450 |
| C34_contig_1450_102 | vegetarian > omnivore | 1.25742 | 0.01372 |
| C34_contig_1450_103 | vegetarian > omnivore | 1.35991 | 0.01372 |
| C34_contig_1450_103 | vegetarian > vegan | 1.59982 | 0.00450 |
| C34_contig_1450_105 | vegetarian > omnivore | 1.35457 | 0.01372 |
| C34_contig_1450_106 | vegetarian > vegan | 1.06721 | 0.00450 |