Cluster: C34.bin_34_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: C34.bin_34
- CGC Family ID: CGCFAM_00196
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C34_contig_3 | C34_contig_3_143 | 145553 | 147499 | + | GH13_9 |
| TF | C34_contig_3 | C34_contig_3_144 | 147771 | 148304 | + | MarR |
| TC | C34_contig_3 | C34_contig_3_145 | 148267 | 150015 | + | 3.A.1.135.5 |
| TC | C34_contig_3 | C34_contig_3_146 | 149996 | 151918 | + | 3.A.1.135.5 |
Gene ID: C34_contig_3_143
Type: CAZyme
Location: 145553 - 147499 (+)
Type: CAZyme
Location: 145553 - 147499 (+)
Gene ID: C34_contig_3_144
Type: TF
Location: 147771 - 148304 (+)
Type: TF
Location: 147771 - 148304 (+)
Gene ID: C34_contig_3_145
Type: TC
Location: 148267 - 150015 (+)
Type: TC
Location: 148267 - 150015 (+)
Gene ID: C34_contig_3_146
Type: TC
Location: 149996 - 151918 (+)
Type: TC
Location: 149996 - 151918 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_3_143 | vegan > omnivore | 2.02729 | 0.01729 |
| C34_contig_3_144 | vegan > omnivore | 3.72493 | 0.01729 |
| C34_contig_3_145 | vegan > omnivore | 1.26988 | 0.01729 |