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Cluster: C34.bin_34_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme C34_contig_1083 C34_contig_1083_160 176866 179172 + GH3
TC C34_contig_1083 C34_contig_1083_161 179169 180599 + 2.A.2.1.1
NULL(UNKNOWN) C34_contig_1083 C34_contig_1083_162 180680 180844 + NULL(UNKNOWN)
[View Structural Homologs]
TC C34_contig_1083 C34_contig_1083_163 180832 181518 + 9.A.11.1.1
pfam C34_contig_1083 C34_contig_1083_164 181478 181900 + SpoVAB
TC C34_contig_1083 C34_contig_1083_165 181897 182379 + 9.A.11.1.1
TF C34_contig_1083 C34_contig_1083_166 182463 182903 + MarR
TC C34_contig_1083 C34_contig_1083_167 182905 184248 + 2.A.66.1.28
NULL(UNKNOWN) C34_contig_1083 C34_contig_1083_168 184250 185152 + NULL(UNKNOWN)
[View Structural Homologs]
STP C34_contig_1083 C34_contig_1083_169 185285 185944 + HhH-GPD
TC C34_contig_1083 C34_contig_1083_170 186249 186935 + 2.A.106.1.3
Gene ID: C34_contig_1083_160
Type: CAZyme
Location: 176866 - 179172 (+)
Gene ID: C34_contig_1083_161
Type: TC
Location: 179169 - 180599 (+)
Gene ID: C34_contig_1083_162
Type:
Location: 180680 - 180844 (+)
Gene ID: C34_contig_1083_163
Type: TC
Location: 180832 - 181518 (+)
Gene ID: C34_contig_1083_164
Type: pfam
Location: 181478 - 181900 (+)
Gene ID: C34_contig_1083_165
Type: TC
Location: 181897 - 182379 (+)
Gene ID: C34_contig_1083_166
Type: TF
Location: 182463 - 182903 (+)
Gene ID: C34_contig_1083_167
Type: TC
Location: 182905 - 184248 (+)
Gene ID: C34_contig_1083_168
Type:
Location: 184250 - 185152 (+)
Gene ID: C34_contig_1083_169
Type: STP
Location: 185285 - 185944 (+)
Gene ID: C34_contig_1083_170
Type: TC
Location: 186249 - 186935 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C34_contig_1083_163 vegan > omnivore 1.56194 0.01729
C34_contig_1083_165 vegan > omnivore 1.33177 0.01729

🧭 Explore Read Mapping of CGC

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