Cluster: C34.bin_34_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: C34.bin_34
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C34_contig_1083 | C34_contig_1083_89 | 105957 | 107507 | + | 3.A.1.121.4 |
| NULL(UNKNOWN) | C34_contig_1083 | C34_contig_1083_90 | 112291 | 112560 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | C34_contig_1083 | C34_contig_1083_91 | 113376 | 114395 | - | S1_6 |
| TC | C34_contig_1083 | C34_contig_1083_92 | 114418 | 115077 | - | 1.A.62.2.2 |
| CAZyme | C34_contig_1083 | C34_contig_1083_93 | 115170 | 116021 | - | CE4 |
| TC | C34_contig_1083 | C34_contig_1083_94 | 116143 | 116505 | + | 1.E.14.1.1 |
| TC | C34_contig_1083 | C34_contig_1083_95 | 116505 | 117194 | + | 2.A.122.1.4 |
Gene ID: C34_contig_1083_89
Type: TC
Location: 105957 - 107507 (+)
Type: TC
Location: 105957 - 107507 (+)
Gene ID: C34_contig_1083_90
Type:
Location: 112291 - 112560 (+)
Type:
Location: 112291 - 112560 (+)
Gene ID: C34_contig_1083_91
Type: sulfatase
Location: 113376 - 114395 (-)
Type: sulfatase
Location: 113376 - 114395 (-)
Gene ID: C34_contig_1083_92
Type: TC
Location: 114418 - 115077 (-)
Type: TC
Location: 114418 - 115077 (-)
Gene ID: C34_contig_1083_93
Type: CAZyme
Location: 115170 - 116021 (-)
Type: CAZyme
Location: 115170 - 116021 (-)
Gene ID: C34_contig_1083_94
Type: TC
Location: 116143 - 116505 (+)
Type: TC
Location: 116143 - 116505 (+)
Gene ID: C34_contig_1083_95
Type: TC
Location: 116505 - 117194 (+)
Type: TC
Location: 116505 - 117194 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_1083_89 | vegan > omnivore | 1.28295 | 0.01729 |
| C34_contig_1083_91 | vegan > omnivore | 1.55352 | 0.01729 |
| C34_contig_1083_92 | vegan > omnivore | 2.42330 | 0.01489 |
| C34_contig_1083_93 | vegan > omnivore | 1.04000 | 0.01729 |
| C34_contig_1083_94 | vegan > omnivore | 1.66392 | 0.01729 |