Cluster: C34.bin_34_CGC18
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: C34.bin_34
- CGC Family ID: CGCFAM_02164
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C34_contig_3 | C34_contig_3_1097 | 1152566 | 1154203 | - | 3.A.1.5.2 |
| peptidase | C34_contig_3 | C34_contig_3_1098 | 1154376 | 1155617 | - | M24.UNB |
| TC | C34_contig_3 | C34_contig_3_1099 | 1155793 | 1156758 | - | 3.A.1.5.20 |
| TC | C34_contig_3 | C34_contig_3_1100 | 1156760 | 1157791 | - | 3.A.1.5.2 |
| TC | C34_contig_3 | C34_contig_3_1101 | 1157804 | 1158727 | - | 3.A.1.5.2 |
| TC | C34_contig_3 | C34_contig_3_1102 | 1158737 | 1159657 | - | 3.A.1.5.2 |
| TC | C34_contig_3 | C34_contig_3_1103 | 1159815 | 1161458 | - | 3.A.1.5.2 |
| peptidase | C34_contig_3 | C34_contig_3_1104 | 1161475 | 1162509 | - | M24.UPB |
| CAZyme | C34_contig_3 | C34_contig_3_1105 | 1162562 | 1164634 | - | GH146 |
Gene ID: C34_contig_3_1097
Type: TC
Location: 1152566 - 1154203 (-)
Type: TC
Location: 1152566 - 1154203 (-)
Gene ID: C34_contig_3_1098
Type: peptidase
Location: 1154376 - 1155617 (-)
Type: peptidase
Location: 1154376 - 1155617 (-)
Gene ID: C34_contig_3_1099
Type: TC
Location: 1155793 - 1156758 (-)
Type: TC
Location: 1155793 - 1156758 (-)
Gene ID: C34_contig_3_1100
Type: TC
Location: 1156760 - 1157791 (-)
Type: TC
Location: 1156760 - 1157791 (-)
Gene ID: C34_contig_3_1101
Type: TC
Location: 1157804 - 1158727 (-)
Type: TC
Location: 1157804 - 1158727 (-)
Gene ID: C34_contig_3_1102
Type: TC
Location: 1158737 - 1159657 (-)
Type: TC
Location: 1158737 - 1159657 (-)
Gene ID: C34_contig_3_1103
Type: TC
Location: 1159815 - 1161458 (-)
Type: TC
Location: 1159815 - 1161458 (-)
Gene ID: C34_contig_3_1104
Type: peptidase
Location: 1161475 - 1162509 (-)
Type: peptidase
Location: 1161475 - 1162509 (-)
Gene ID: C34_contig_3_1105
Type: CAZyme
Location: 1162562 - 1164634 (-)
Type: CAZyme
Location: 1162562 - 1164634 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_3_1098 | vegan > omnivore | 1.60253 | 0.01729 |
| C34_contig_3_1100 | vegan > omnivore | 1.44441 | 0.01729 |
| C34_contig_3_1101 | vegan > omnivore | 3.09855 | 0.01729 |
| C34_contig_3_1102 | vegan > omnivore | 1.38225 | 0.01729 |
| C34_contig_3_1103 | vegan > omnivore | 2.05340 | 0.01729 |
| C34_contig_3_1104 | vegan > omnivore | 2.42791 | 0.01729 |
| C34_contig_3_1105 | vegan > omnivore | 2.75746 | 0.01729 |