Cluster: C34.bin_34_CGC16
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: C34.bin_34
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C34_contig_3 | C34_contig_3_835 | 865632 | 866573 | - | GT2 |
| TF | C34_contig_3 | C34_contig_3_836 | 866577 | 867770 | - | MerR |
| NULL(UNKNOWN) | C34_contig_3 | C34_contig_3_837 | 867869 | 868468 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C34_contig_3 | C34_contig_3_838 | 868488 | 869228 | - | 3.A.1.103.1 |
| TC | C34_contig_3 | C34_contig_3_839 | 869238 | 870014 | - | 3.A.1.103.6 |
| CAZyme | C34_contig_3 | C34_contig_3_840 | 870065 | 872224 | - | GT4 |
| CAZyme | C34_contig_3 | C34_contig_3_841 | 872249 | 873418 | - | GT2 |
| CAZyme | C34_contig_3 | C34_contig_3_842 | 873424 | 875610 | - | GT4 |
| CAZyme | C34_contig_3 | C34_contig_3_843 | 875623 | 877443 | - | GT2 |
| pfam | C34_contig_3 | C34_contig_3_844 | 877386 | 878804 | - | DUF2142 |
| pfam | C34_contig_3 | C34_contig_3_845 | 878794 | 879159 | - | DUF2304 |
| CAZyme | C34_contig_3 | C34_contig_3_846 | 879171 | 879863 | - | GT2 |
| CAZyme | C34_contig_3 | C34_contig_3_847 | 879882 | 880679 | - | GT2 |
Gene ID: C34_contig_3_835
Type: CAZyme
Location: 865632 - 866573 (-)
Type: CAZyme
Location: 865632 - 866573 (-)
Gene ID: C34_contig_3_836
Type: TF
Location: 866577 - 867770 (-)
Type: TF
Location: 866577 - 867770 (-)
Gene ID: C34_contig_3_837
Type:
Location: 867869 - 868468 (-)
Type:
Location: 867869 - 868468 (-)
Gene ID: C34_contig_3_838
Type: TC
Location: 868488 - 869228 (-)
Type: TC
Location: 868488 - 869228 (-)
Gene ID: C34_contig_3_839
Type: TC
Location: 869238 - 870014 (-)
Type: TC
Location: 869238 - 870014 (-)
Gene ID: C34_contig_3_840
Type: CAZyme
Location: 870065 - 872224 (-)
Type: CAZyme
Location: 870065 - 872224 (-)
Gene ID: C34_contig_3_841
Type: CAZyme
Location: 872249 - 873418 (-)
Type: CAZyme
Location: 872249 - 873418 (-)
Gene ID: C34_contig_3_842
Type: CAZyme
Location: 873424 - 875610 (-)
Type: CAZyme
Location: 873424 - 875610 (-)
Gene ID: C34_contig_3_843
Type: CAZyme
Location: 875623 - 877443 (-)
Type: CAZyme
Location: 875623 - 877443 (-)
Gene ID: C34_contig_3_844
Type: pfam
Location: 877386 - 878804 (-)
Type: pfam
Location: 877386 - 878804 (-)
Gene ID: C34_contig_3_845
Type: pfam
Location: 878794 - 879159 (-)
Type: pfam
Location: 878794 - 879159 (-)
Gene ID: C34_contig_3_846
Type: CAZyme
Location: 879171 - 879863 (-)
Type: CAZyme
Location: 879171 - 879863 (-)
Gene ID: C34_contig_3_847
Type: CAZyme
Location: 879882 - 880679 (-)
Type: CAZyme
Location: 879882 - 880679 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.