Cluster: C34.bin_34_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: C34.bin_34
- CGC Family ID: CGCFAM_02663
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C34_contig_3 | C34_contig_3_641 | 650478 | 650864 | - | 9.B.70.1.1 |
| pfam | C34_contig_3 | C34_contig_3_642 | 650940 | 651134 | - | SpoIIIAC |
| pfam | C34_contig_3 | C34_contig_3_643 | 651146 | 651664 | - | Spore_III_AB |
| TC | C34_contig_3 | C34_contig_3_644 | 651687 | 652691 | - | 9.B.70.1.1 |
| pfam | C34_contig_3 | C34_contig_3_645 | 652790 | 653800 | - | NAD_Gly3P_dh_N | ApbA | NAD_binding_2 | F420_oxidored | NAD_Gly3P_dh_C | GPD_NAD_C_bact |
| TC | C34_contig_3 | C34_contig_3_646 | 653832 | 654476 | - | 9.B.31.1.2 |
| pfam | C34_contig_3 | C34_contig_3_647 | 654479 | 655807 | - | GTP_EFTU | MMR_HSR1 | MMR_HSR1 | FeoB_N | FeoB_N | AIG1 | KH_dom-like |
| STP | C34_contig_3 | C34_contig_3_648 | 655942 | 657114 | + | Pribosyltran |
| CAZyme | C34_contig_3 | C34_contig_3_649 | 657199 | 658650 | - | CE4 |
Gene ID: C34_contig_3_641
Type: TC
Location: 650478 - 650864 (-)
Type: TC
Location: 650478 - 650864 (-)
Gene ID: C34_contig_3_642
Type: pfam
Location: 650940 - 651134 (-)
Type: pfam
Location: 650940 - 651134 (-)
Gene ID: C34_contig_3_643
Type: pfam
Location: 651146 - 651664 (-)
Type: pfam
Location: 651146 - 651664 (-)
Gene ID: C34_contig_3_644
Type: TC
Location: 651687 - 652691 (-)
Type: TC
Location: 651687 - 652691 (-)
Gene ID: C34_contig_3_645
Type: pfam
Location: 652790 - 653800 (-)
Type: pfam
Location: 652790 - 653800 (-)
Gene ID: C34_contig_3_646
Type: TC
Location: 653832 - 654476 (-)
Type: TC
Location: 653832 - 654476 (-)
Gene ID: C34_contig_3_647
Type: pfam
Location: 654479 - 655807 (-)
Type: pfam
Location: 654479 - 655807 (-)
Gene ID: C34_contig_3_648
Type: STP
Location: 655942 - 657114 (+)
Type: STP
Location: 655942 - 657114 (+)
Gene ID: C34_contig_3_649
Type: CAZyme
Location: 657199 - 658650 (-)
Type: CAZyme
Location: 657199 - 658650 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C34_contig_3_643 | vegan > omnivore | 1.06553 | 0.01729 |
| C34_contig_3_644 | vegan > omnivore | 1.76369 | 0.01729 |
| C34_contig_3_644 | vegetarian > omnivore | 2.60949 | 0.04290 |
| C34_contig_3_645 | vegan > omnivore | 1.24131 | 0.01729 |
| C34_contig_3_646 | vegan > omnivore | 2.31102 | 0.01729 |
| C34_contig_3_649 | vegan > omnivore | 1.50352 | 0.01729 |