Cluster: C19.bin_16_CGC19
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: C19.bin_16
- CGC Family ID: CGCFAM_01353
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C19_contig_1130 | C19_contig_1130_262 | 293069 | 294178 | + | 3.A.1.1.22 |
| pfam | C19_contig_1130 | C19_contig_1130_263 | 294253 | 295146 | - | EamA | EamA |
| pfam | C19_contig_1130 | C19_contig_1130_264 | 295148 | 296149 | - | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | C19_contig_1130 | C19_contig_1130_265 | 296146 | 298194 | - | GT2 | GT4 |
| pfam | C19_contig_1130 | C19_contig_1130_266 | 298234 | 299544 | - | Ubie_methyltran | PrmA | MetW | Methyltransf_9 | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | C19_contig_1130 | C19_contig_1130_267 | 299586 | 300722 | - | GT4 |
| CAZyme | C19_contig_1130 | C19_contig_1130_268 | 300730 | 303117 | - | GT4 | GT4 |
| TC | C19_contig_1130 | C19_contig_1130_269 | 303114 | 303842 | - | 3.A.1.103.1 |
| TC | C19_contig_1130 | C19_contig_1130_270 | 303856 | 304656 | - | 3.A.1.103.6 |
| CAZyme | C19_contig_1130 | C19_contig_1130_271 | 304738 | 305700 | - | GT2 |
| CAZyme | C19_contig_1130 | C19_contig_1130_272 | 305697 | 306812 | - | GT4 |
Gene ID: C19_contig_1130_262
Type: TC
Location: 293069 - 294178 (+)
Type: TC
Location: 293069 - 294178 (+)
Gene ID: C19_contig_1130_263
Type: pfam
Location: 294253 - 295146 (-)
Type: pfam
Location: 294253 - 295146 (-)
Gene ID: C19_contig_1130_264
Type: pfam
Location: 295148 - 296149 (-)
Type: pfam
Location: 295148 - 296149 (-)
Gene ID: C19_contig_1130_265
Type: CAZyme
Location: 296146 - 298194 (-)
Type: CAZyme
Location: 296146 - 298194 (-)
Gene ID: C19_contig_1130_266
Type: pfam
Location: 298234 - 299544 (-)
Type: pfam
Location: 298234 - 299544 (-)
Gene ID: C19_contig_1130_267
Type: CAZyme
Location: 299586 - 300722 (-)
Type: CAZyme
Location: 299586 - 300722 (-)
Gene ID: C19_contig_1130_268
Type: CAZyme
Location: 300730 - 303117 (-)
Type: CAZyme
Location: 300730 - 303117 (-)
Gene ID: C19_contig_1130_269
Type: TC
Location: 303114 - 303842 (-)
Type: TC
Location: 303114 - 303842 (-)
Gene ID: C19_contig_1130_270
Type: TC
Location: 303856 - 304656 (-)
Type: TC
Location: 303856 - 304656 (-)
Gene ID: C19_contig_1130_271
Type: CAZyme
Location: 304738 - 305700 (-)
Type: CAZyme
Location: 304738 - 305700 (-)
Gene ID: C19_contig_1130_272
Type: CAZyme
Location: 305697 - 306812 (-)
Type: CAZyme
Location: 305697 - 306812 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Ventricola
Species
Ventricola sp900542445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C19_contig_1130_265 | vegetarian > omnivore | 1.77163 | 0.01047 |
| C19_contig_1130_265 | vegetarian > vegan | 1.07908 | 0.01232 |
| C19_contig_1130_267 | vegetarian > omnivore | 1.47099 | 0.01047 |
| C19_contig_1130_267 | vegetarian > vegan | 1.28729 | 0.01232 |
| C19_contig_1130_271 | vegetarian > omnivore | 1.11420 | 0.01047 |