Cluster: C162.bin_13_CGC9
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate:
- Genome ID: C162.bin_13
- CGC Family ID: CGCFAM_00283
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C162_contig_15 | C162_contig_15_929 | 997147 | 999288 | - | GH43_29 |
| CAZyme | C162_contig_15 | C162_contig_15_930 | 999352 | 1000953 | - | GH43_29 |
| CAZyme | C162_contig_15 | C162_contig_15_931 | 1001051 | 1003150 | + | GH43_4 |
| pfam | C162_contig_15 | C162_contig_15_932 | 1003212 | 1003454 | - | DUF6171 |
| CAZyme | C162_contig_15 | C162_contig_15_933 | 1003457 | 1004962 | - | GH51_1 |
| CAZyme | C162_contig_15 | C162_contig_15_934 | 1004979 | 1005935 | - | GH43_26 |
| STP | C162_contig_15 | C162_contig_15_935 | 1006035 | 1007606 | - | SBP_bac_1 |
| TC | C162_contig_15 | C162_contig_15_936 | 1007878 | 1008894 | - | 3.A.1.1.20 |
| TC | C162_contig_15 | C162_contig_15_937 | 1008860 | 1009888 | - | 3.A.1.1.11 |
| pfam | C162_contig_15 | C162_contig_15_938 | 1009885 | 1012215 | - | DUF5696 |
| pfam | C162_contig_15 | C162_contig_15_939 | 1012205 | 1014271 | - | Yip1 |
| TC | C162_contig_15 | C162_contig_15_940 | 1014305 | 1015174 | - | 3.A.1.1.39 |
| TC | C162_contig_15 | C162_contig_15_941 | 1015195 | 1016139 | - | 3.A.1.1.34 |
| STP | C162_contig_15 | C162_contig_15_942 | 1016162 | 1019221 | - | SBP_bac_1 |
| NULL(UNKNOWN) | C162_contig_15 | C162_contig_15_943 | 1019459 | 1019836 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C162_contig_15 | C162_contig_15_944 | 1019826 | 1021457 | - | GH43_4 |
Gene ID: C162_contig_15_929
Type: CAZyme
Location: 997147 - 999288 (-)
Type: CAZyme
Location: 997147 - 999288 (-)
Gene ID: C162_contig_15_930
Type: CAZyme
Location: 999352 - 1000953 (-)
Type: CAZyme
Location: 999352 - 1000953 (-)
Gene ID: C162_contig_15_931
Type: CAZyme
Location: 1001051 - 1003150 (+)
Type: CAZyme
Location: 1001051 - 1003150 (+)
Gene ID: C162_contig_15_932
Type: pfam
Location: 1003212 - 1003454 (-)
Type: pfam
Location: 1003212 - 1003454 (-)
Gene ID: C162_contig_15_933
Type: CAZyme
Location: 1003457 - 1004962 (-)
Type: CAZyme
Location: 1003457 - 1004962 (-)
Gene ID: C162_contig_15_934
Type: CAZyme
Location: 1004979 - 1005935 (-)
Type: CAZyme
Location: 1004979 - 1005935 (-)
Gene ID: C162_contig_15_935
Type: STP
Location: 1006035 - 1007606 (-)
Type: STP
Location: 1006035 - 1007606 (-)
Gene ID: C162_contig_15_936
Type: TC
Location: 1007878 - 1008894 (-)
Type: TC
Location: 1007878 - 1008894 (-)
Gene ID: C162_contig_15_937
Type: TC
Location: 1008860 - 1009888 (-)
Type: TC
Location: 1008860 - 1009888 (-)
Gene ID: C162_contig_15_938
Type: pfam
Location: 1009885 - 1012215 (-)
Type: pfam
Location: 1009885 - 1012215 (-)
Gene ID: C162_contig_15_939
Type: pfam
Location: 1012205 - 1014271 (-)
Type: pfam
Location: 1012205 - 1014271 (-)
Gene ID: C162_contig_15_940
Type: TC
Location: 1014305 - 1015174 (-)
Type: TC
Location: 1014305 - 1015174 (-)
Gene ID: C162_contig_15_941
Type: TC
Location: 1015195 - 1016139 (-)
Type: TC
Location: 1015195 - 1016139 (-)
Gene ID: C162_contig_15_942
Type: STP
Location: 1016162 - 1019221 (-)
Type: STP
Location: 1016162 - 1019221 (-)
Gene ID: C162_contig_15_943
Type:
Location: 1019459 - 1019836 (-)
Type:
Location: 1019459 - 1019836 (-)
Gene ID: C162_contig_15_944
Type: CAZyme
Location: 1019826 - 1021457 (-)
Type: CAZyme
Location: 1019826 - 1021457 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Eubacterium_F
Species
Eubacterium_F sp000433735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.