Cluster: C137.bin_8_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: C137.bin_8
- CGC Family ID: CGCFAM_02267
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C137_contig_227 | C137_contig_227_267 | 296142 | 297404 | + | 4.A.3.2.2 |
| TC | C137_contig_227 | C137_contig_227_268 | 297397 | 297723 | + | 4.A.3.1.1 |
| CAZyme | C137_contig_227 | C137_contig_227_269 | 297725 | 299191 | + | GH1 |
| STP | C137_contig_227 | C137_contig_227_270 | 299460 | 299672 | + | FeoA |
| STP | C137_contig_227 | C137_contig_227_271 | 299687 | 299938 | + | FeoA |
| TC | C137_contig_227 | C137_contig_227_272 | 300039 | 302234 | + | 9.A.8.1.6 |
Gene ID: C137_contig_227_267
Type: TC
Location: 296142 - 297404 (+)
Type: TC
Location: 296142 - 297404 (+)
Gene ID: C137_contig_227_268
Type: TC
Location: 297397 - 297723 (+)
Type: TC
Location: 297397 - 297723 (+)
Gene ID: C137_contig_227_269
Type: CAZyme
Location: 297725 - 299191 (+)
Type: CAZyme
Location: 297725 - 299191 (+)
Gene ID: C137_contig_227_270
Type: STP
Location: 299460 - 299672 (+)
Type: STP
Location: 299460 - 299672 (+)
Gene ID: C137_contig_227_271
Type: STP
Location: 299687 - 299938 (+)
Type: STP
Location: 299687 - 299938 (+)
Gene ID: C137_contig_227_272
Type: TC
Location: 300039 - 302234 (+)
Type: TC
Location: 300039 - 302234 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C137_contig_227_268 | vegetarian > vegan | 1.08926 | 0.00110 |