Cluster: C137.bin_8_CGC28
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: C137.bin_8
- CGC Family ID: CGCFAM_00193
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C137_contig_256 | C137_contig_256_454 | 492794 | 493840 | + | 3.A.1.1.20 |
| TC | C137_contig_256 | C137_contig_256_455 | 493841 | 494695 | + | 3.A.1.1.18 |
| pfam | C137_contig_256 | C137_contig_256_456 | 494718 | 495950 | + | GlcNAc_2-epim |
| CAZyme | C137_contig_256 | C137_contig_256_457 | 495963 | 497138 | + | GH130_1 |
| CAZyme | C137_contig_256 | C137_contig_256_458 | 497193 | 498215 | + | GH130_2 |
| CAZyme | C137_contig_256 | C137_contig_256_459 | 498341 | 499411 | + | CE2 |
| CAZyme | C137_contig_256 | C137_contig_256_460 | 499452 | 500609 | + | CBM35inCE17 | CE17 |
| CAZyme | C137_contig_256 | C137_contig_256_461 | 500722 | 503037 | + | GH1 |
| CAZyme | C137_contig_256 | C137_contig_256_462 | 503121 | 504425 | + | GH3 |
| TC | C137_contig_256 | C137_contig_256_463 | 504506 | 505816 | + | 1.B.52.2.2 |
| TC | C137_contig_256 | C137_contig_256_464 | 505900 | 507051 | + | 2.A.1.15.18 |
| CAZyme | C137_contig_256 | C137_contig_256_465 | 507191 | 509464 | + | GH2 |
Gene ID: C137_contig_256_454
Type: TC
Location: 492794 - 493840 (+)
Type: TC
Location: 492794 - 493840 (+)
Gene ID: C137_contig_256_455
Type: TC
Location: 493841 - 494695 (+)
Type: TC
Location: 493841 - 494695 (+)
Gene ID: C137_contig_256_456
Type: pfam
Location: 494718 - 495950 (+)
Type: pfam
Location: 494718 - 495950 (+)
Gene ID: C137_contig_256_457
Type: CAZyme
Location: 495963 - 497138 (+)
Type: CAZyme
Location: 495963 - 497138 (+)
Gene ID: C137_contig_256_458
Type: CAZyme
Location: 497193 - 498215 (+)
Type: CAZyme
Location: 497193 - 498215 (+)
Gene ID: C137_contig_256_459
Type: CAZyme
Location: 498341 - 499411 (+)
Type: CAZyme
Location: 498341 - 499411 (+)
Gene ID: C137_contig_256_460
Type: CAZyme
Location: 499452 - 500609 (+)
Type: CAZyme
Location: 499452 - 500609 (+)
Gene ID: C137_contig_256_461
Type: CAZyme
Location: 500722 - 503037 (+)
Type: CAZyme
Location: 500722 - 503037 (+)
Gene ID: C137_contig_256_462
Type: CAZyme
Location: 503121 - 504425 (+)
Type: CAZyme
Location: 503121 - 504425 (+)
Gene ID: C137_contig_256_463
Type: TC
Location: 504506 - 505816 (+)
Type: TC
Location: 504506 - 505816 (+)
Gene ID: C137_contig_256_464
Type: TC
Location: 505900 - 507051 (+)
Type: TC
Location: 505900 - 507051 (+)
Gene ID: C137_contig_256_465
Type: CAZyme
Location: 507191 - 509464 (+)
Type: CAZyme
Location: 507191 - 509464 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C137_contig_256_456 | vegetarian > vegan | 1.22004 | 0.00110 |
| C137_contig_256_459 | vegetarian > vegan | 1.04620 | 0.00110 |
| C137_contig_256_460 | vegetarian > vegan | 1.27362 | 0.00110 |
| C137_contig_256_461 | vegetarian > vegan | 1.32532 | 0.00110 |
| C137_contig_256_464 | vegetarian > vegan | 1.39693 | 0.00110 |