Cluster: C137.bin_8_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: C137.bin_8
- CGC Family ID: CGCFAM_00121
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C137_contig_256 | C137_contig_256_436 | 469498 | 471897 | + | GH94 |
| pfam | C137_contig_256 | C137_contig_256_437 | 471924 | 473336 | + | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| TC | C137_contig_256 | C137_contig_256_438 | 473761 | 475644 | + | 8.A.59.2.1 |
| STP | C137_contig_256 | C137_contig_256_439 | 475745 | 477094 | + | SBP_bac_1 |
| TC | C137_contig_256 | C137_contig_256_440 | 477199 | 478125 | + | 3.A.1.1.7 |
| TC | C137_contig_256 | C137_contig_256_441 | 478126 | 478992 | + | 3.A.1.1.18 |
Gene ID: C137_contig_256_436
Type: CAZyme
Location: 469498 - 471897 (+)
Type: CAZyme
Location: 469498 - 471897 (+)
Gene ID: C137_contig_256_437
Type: pfam
Location: 471924 - 473336 (+)
Type: pfam
Location: 471924 - 473336 (+)
Gene ID: C137_contig_256_438
Type: TC
Location: 473761 - 475644 (+)
Type: TC
Location: 473761 - 475644 (+)
Gene ID: C137_contig_256_439
Type: STP
Location: 475745 - 477094 (+)
Type: STP
Location: 475745 - 477094 (+)
Gene ID: C137_contig_256_440
Type: TC
Location: 477199 - 478125 (+)
Type: TC
Location: 477199 - 478125 (+)
Gene ID: C137_contig_256_441
Type: TC
Location: 478126 - 478992 (+)
Type: TC
Location: 478126 - 478992 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C137_contig_256_437 | vegetarian > vegan | 1.05579 | 0.00110 |
| C137_contig_256_439 | vegetarian > vegan | 1.50992 | 0.00110 |
| C137_contig_256_440 | vegetarian > vegan | 1.37542 | 0.00110 |
| C137_contig_256_441 | vegetarian > vegan | 1.15851 | 0.00110 |