Cluster: C137.bin_8_CGC26
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: C137.bin_8
- CGC Family ID: CGCFAM_00039
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C137_contig_256 | C137_contig_256_363 | 385508 | 387961 | + | GT2 | GT2 |
| NULL(UNKNOWN) | C137_contig_256 | C137_contig_256_364 | 388039 | 388236 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C137_contig_256 | C137_contig_256_365 | 388202 | 390148 | + | GT2 | GT2 |
| CAZyme | C137_contig_256 | C137_contig_256_366 | 390162 | 391124 | + | GT2 |
| TC | C137_contig_256 | C137_contig_256_367 | 391270 | 392688 | + | 9.B.18.1.1 |
| pfam | C137_contig_256 | C137_contig_256_368 | 392700 | 393878 | + | LytR_cpsA_psr |
| CAZyme | C137_contig_256 | C137_contig_256_369 | 393878 | 394861 | + | GT2 |
| CAZyme | C137_contig_256 | C137_contig_256_370 | 394872 | 395852 | + | GT2 |
| pfam | C137_contig_256 | C137_contig_256_371 | 395921 | 397279 | + | DUF6056 |
| peptidase | C137_contig_256 | C137_contig_256_372 | 397427 | 398995 | + | S01.UPC |
| CAZyme | C137_contig_256 | C137_contig_256_373 | 399608 | 400918 | - | GH13_20 |
Gene ID: C137_contig_256_363
Type: CAZyme
Location: 385508 - 387961 (+)
Type: CAZyme
Location: 385508 - 387961 (+)
Gene ID: C137_contig_256_364
Type:
Location: 388039 - 388236 (+)
Type:
Location: 388039 - 388236 (+)
Gene ID: C137_contig_256_365
Type: CAZyme
Location: 388202 - 390148 (+)
Type: CAZyme
Location: 388202 - 390148 (+)
Gene ID: C137_contig_256_366
Type: CAZyme
Location: 390162 - 391124 (+)
Type: CAZyme
Location: 390162 - 391124 (+)
Gene ID: C137_contig_256_367
Type: TC
Location: 391270 - 392688 (+)
Type: TC
Location: 391270 - 392688 (+)
Gene ID: C137_contig_256_368
Type: pfam
Location: 392700 - 393878 (+)
Type: pfam
Location: 392700 - 393878 (+)
Gene ID: C137_contig_256_369
Type: CAZyme
Location: 393878 - 394861 (+)
Type: CAZyme
Location: 393878 - 394861 (+)
Gene ID: C137_contig_256_370
Type: CAZyme
Location: 394872 - 395852 (+)
Type: CAZyme
Location: 394872 - 395852 (+)
Gene ID: C137_contig_256_371
Type: pfam
Location: 395921 - 397279 (+)
Type: pfam
Location: 395921 - 397279 (+)
Gene ID: C137_contig_256_372
Type: peptidase
Location: 397427 - 398995 (+)
Type: peptidase
Location: 397427 - 398995 (+)
Gene ID: C137_contig_256_373
Type: CAZyme
Location: 399608 - 400918 (-)
Type: CAZyme
Location: 399608 - 400918 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C137_contig_256_364 | vegetarian > vegan | 1.11135 | 0.00110 |
| C137_contig_256_365 | vegetarian > vegan | 1.09576 | 0.00110 |
| C137_contig_256_366 | vegetarian > vegan | 1.00548 | 0.00110 |
| C137_contig_256_368 | vegetarian > vegan | 1.18212 | 0.00110 |
| C137_contig_256_370 | vegetarian > vegan | 1.06027 | 0.00110 |