Cluster: C137.bin_8_CGC20
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: C137.bin_8
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C137_contig_256 | C137_contig_256_218 | 215330 | 216205 | + | 2.A.115.1.1 |
| TF | C137_contig_256 | C137_contig_256_219 | 216202 | 217107 | + | HTH_1 |
| NULL(UNKNOWN) | C137_contig_256 | C137_contig_256_220 | 217257 | 217391 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C137_contig_256 | C137_contig_256_221 | 217488 | 218576 | + | 3.A.1.24.1 |
| TC | C137_contig_256 | C137_contig_256_222 | 218566 | 219225 | + | 3.A.1.24.5 |
| TC | C137_contig_256 | C137_contig_256_223 | 219272 | 220192 | + | 3.A.1.24.5 |
| NULL(UNKNOWN) | C137_contig_256 | C137_contig_256_224 | 220281 | 220460 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C137_contig_256 | C137_contig_256_225 | 220908 | 222596 | + | 1.B.52.2.2 |
| TC | C137_contig_256 | C137_contig_256_226 | 222783 | 225368 | + | 3.A.3.2.21 |
| TC | C137_contig_256 | C137_contig_256_227 | 225591 | 228200 | + | 3.A.3.2.21 |
| CAZyme | C137_contig_256 | C137_contig_256_228 | 228286 | 230049 | + | GH13_36 |
Gene ID: C137_contig_256_218
Type: TC
Location: 215330 - 216205 (+)
Type: TC
Location: 215330 - 216205 (+)
Gene ID: C137_contig_256_219
Type: TF
Location: 216202 - 217107 (+)
Type: TF
Location: 216202 - 217107 (+)
Gene ID: C137_contig_256_220
Type:
Location: 217257 - 217391 (+)
Type:
Location: 217257 - 217391 (+)
Gene ID: C137_contig_256_221
Type: TC
Location: 217488 - 218576 (+)
Type: TC
Location: 217488 - 218576 (+)
Gene ID: C137_contig_256_222
Type: TC
Location: 218566 - 219225 (+)
Type: TC
Location: 218566 - 219225 (+)
Gene ID: C137_contig_256_223
Type: TC
Location: 219272 - 220192 (+)
Type: TC
Location: 219272 - 220192 (+)
Gene ID: C137_contig_256_224
Type:
Location: 220281 - 220460 (+)
Type:
Location: 220281 - 220460 (+)
Gene ID: C137_contig_256_225
Type: TC
Location: 220908 - 222596 (+)
Type: TC
Location: 220908 - 222596 (+)
Gene ID: C137_contig_256_226
Type: TC
Location: 222783 - 225368 (+)
Type: TC
Location: 222783 - 225368 (+)
Gene ID: C137_contig_256_227
Type: TC
Location: 225591 - 228200 (+)
Type: TC
Location: 225591 - 228200 (+)
Gene ID: C137_contig_256_228
Type: CAZyme
Location: 228286 - 230049 (+)
Type: CAZyme
Location: 228286 - 230049 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C137_contig_256_219 | vegetarian > vegan | 1.20191 | 0.00110 |
| C137_contig_256_220 | vegetarian > vegan | 1.57816 | 0.00110 |
| C137_contig_256_221 | vegetarian > vegan | 1.00200 | 0.00110 |
| C137_contig_256_226 | vegetarian > vegan | 1.16945 | 0.00110 |
| C137_contig_256_228 | vegetarian > vegan | 1.02388 | 0.00110 |