Cluster: C137.bin_8_CGC18
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate:
- Genome ID: C137.bin_8
- CGC Family ID: CGCFAM_03636
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C137_contig_5565 | C137_contig_5565_157 | 189688 | 191712 | - | PL12_1 |
| CAZyme | C137_contig_5565 | C137_contig_5565_158 | 191739 | 192902 | - | GH88 |
| TC | C137_contig_5565 | C137_contig_5565_159 | 193033 | 193902 | - | 3.A.1.1.11 |
| TC | C137_contig_5565 | C137_contig_5565_160 | 193920 | 194975 | - | 3.A.1.1.23 |
| STP | C137_contig_5565 | C137_contig_5565_161 | 195090 | 196463 | - | SBP_bac_1 |
| TC | C137_contig_5565 | C137_contig_5565_162 | 196719 | 198494 | + | 8.A.59.2.1 |
| TF | C137_contig_5565 | C137_contig_5565_163 | 198538 | 200136 | + | HTH_AraC |
| CAZyme | C137_contig_5565 | C137_contig_5565_164 | 200160 | 202322 | - | GH112 |
| CAZyme | C137_contig_5565 | C137_contig_5565_165 | 202368 | 203669 | - | GH136 |
| NULL(UNKNOWN) | C137_contig_5565 | C137_contig_5565_166 | 203620 | 204057 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C137_contig_5565 | C137_contig_5565_167 | 204057 | 204863 | - | 3.A.1.1.4 |
| TC | C137_contig_5565 | C137_contig_5565_168 | 204856 | 205734 | - | 3.A.1.1.4 |
| TC | C137_contig_5565 | C137_contig_5565_169 | 205899 | 207263 | - | 3.A.1.1.4 |
| TF | C137_contig_5565 | C137_contig_5565_170 | 207692 | 208558 | + | HTH_AraC |
| CAZyme | C137_contig_5565 | C137_contig_5565_171 | 208578 | 210380 | - | GH2 |
| CAZyme | C137_contig_5565 | C137_contig_5565_172 | 210446 | 212641 | - | CBM67 | GH78 |
Gene ID: C137_contig_5565_157
Type: CAZyme
Location: 189688 - 191712 (-)
Type: CAZyme
Location: 189688 - 191712 (-)
Gene ID: C137_contig_5565_158
Type: CAZyme
Location: 191739 - 192902 (-)
Type: CAZyme
Location: 191739 - 192902 (-)
Gene ID: C137_contig_5565_159
Type: TC
Location: 193033 - 193902 (-)
Type: TC
Location: 193033 - 193902 (-)
Gene ID: C137_contig_5565_160
Type: TC
Location: 193920 - 194975 (-)
Type: TC
Location: 193920 - 194975 (-)
Gene ID: C137_contig_5565_161
Type: STP
Location: 195090 - 196463 (-)
Type: STP
Location: 195090 - 196463 (-)
Gene ID: C137_contig_5565_162
Type: TC
Location: 196719 - 198494 (+)
Type: TC
Location: 196719 - 198494 (+)
Gene ID: C137_contig_5565_163
Type: TF
Location: 198538 - 200136 (+)
Type: TF
Location: 198538 - 200136 (+)
Gene ID: C137_contig_5565_164
Type: CAZyme
Location: 200160 - 202322 (-)
Type: CAZyme
Location: 200160 - 202322 (-)
Gene ID: C137_contig_5565_165
Type: CAZyme
Location: 202368 - 203669 (-)
Type: CAZyme
Location: 202368 - 203669 (-)
Gene ID: C137_contig_5565_166
Type:
Location: 203620 - 204057 (-)
Type:
Location: 203620 - 204057 (-)
Gene ID: C137_contig_5565_167
Type: TC
Location: 204057 - 204863 (-)
Type: TC
Location: 204057 - 204863 (-)
Gene ID: C137_contig_5565_168
Type: TC
Location: 204856 - 205734 (-)
Type: TC
Location: 204856 - 205734 (-)
Gene ID: C137_contig_5565_169
Type: TC
Location: 205899 - 207263 (-)
Type: TC
Location: 205899 - 207263 (-)
Gene ID: C137_contig_5565_170
Type: TF
Location: 207692 - 208558 (+)
Type: TF
Location: 207692 - 208558 (+)
Gene ID: C137_contig_5565_171
Type: CAZyme
Location: 208578 - 210380 (-)
Type: CAZyme
Location: 208578 - 210380 (-)
Gene ID: C137_contig_5565_172
Type: CAZyme
Location: 210446 - 212641 (-)
Type: CAZyme
Location: 210446 - 212641 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.