Cluster: C137.bin_8_CGC10
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: C137.bin_8
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C137_contig_723 | C137_contig_723_255 | 253767 | 255446 | + | 3.A.1.5.20 |
| TC | C137_contig_723 | C137_contig_723_256 | 255458 | 256456 | + | 3.A.1.5.20 |
| TC | C137_contig_723 | C137_contig_723_257 | 256449 | 257312 | + | 3.A.1.5.2 |
| TC | C137_contig_723 | C137_contig_723_258 | 257336 | 258313 | + | 3.A.1.5.1 |
| TC | C137_contig_723 | C137_contig_723_259 | 258346 | 258942 | + | 3.A.1.5.3 |
| NULL(UNKNOWN) | C137_contig_723 | C137_contig_723_260 | 258965 | 259117 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C137_contig_723 | C137_contig_723_261 | 259198 | 260196 | - | CE8 |
| pfam | C137_contig_723 | C137_contig_723_262 | 260225 | 260731 | - | Flavin_Reduct |
| CAZyme | C137_contig_723 | C137_contig_723_263 | 260929 | 263040 | + | GH13_11 |
Gene ID: C137_contig_723_255
Type: TC
Location: 253767 - 255446 (+)
Type: TC
Location: 253767 - 255446 (+)
Gene ID: C137_contig_723_256
Type: TC
Location: 255458 - 256456 (+)
Type: TC
Location: 255458 - 256456 (+)
Gene ID: C137_contig_723_257
Type: TC
Location: 256449 - 257312 (+)
Type: TC
Location: 256449 - 257312 (+)
Gene ID: C137_contig_723_258
Type: TC
Location: 257336 - 258313 (+)
Type: TC
Location: 257336 - 258313 (+)
Gene ID: C137_contig_723_259
Type: TC
Location: 258346 - 258942 (+)
Type: TC
Location: 258346 - 258942 (+)
Gene ID: C137_contig_723_260
Type:
Location: 258965 - 259117 (-)
Type:
Location: 258965 - 259117 (-)
Gene ID: C137_contig_723_261
Type: CAZyme
Location: 259198 - 260196 (-)
Type: CAZyme
Location: 259198 - 260196 (-)
Gene ID: C137_contig_723_262
Type: pfam
Location: 260225 - 260731 (-)
Type: pfam
Location: 260225 - 260731 (-)
Gene ID: C137_contig_723_263
Type: CAZyme
Location: 260929 - 263040 (+)
Type: CAZyme
Location: 260929 - 263040 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C137_contig_723_255 | vegetarian > vegan | 1.34594 | 0.00110 |
| C137_contig_723_256 | vegetarian > vegan | 1.25474 | 0.00110 |
| C137_contig_723_257 | vegetarian > vegan | 1.20275 | 0.00110 |
| C137_contig_723_258 | vegetarian > vegan | 1.24291 | 0.00110 |
| C137_contig_723_259 | vegetarian > vegan | 1.05422 | 0.00110 |
| C137_contig_723_260 | vegetarian > vegan | 1.41415 | 0.00110 |