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Cluster: C130.bin_12_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC C130_contig_2578 C130_contig_2578_54 52134 53867 + 3.A.1.106.9
TC C130_contig_2578 C130_contig_2578_55 53860 55509 + 3.A.1.135.5
TF C130_contig_2578 C130_contig_2578_56 55484 56386 - HTH_1
TC C130_contig_2578 C130_contig_2578_57 56511 57866 + 2.A.22.5.3
pfam C130_contig_2578 C130_contig_2578_58 58240 59166 - AP_endonuc_2
CAZyme C130_contig_2578 C130_contig_2578_59 59255 60061 - GH25
Gene ID: C130_contig_2578_54
Type: TC
Location: 52134 - 53867 (+)
Gene ID: C130_contig_2578_55
Type: TC
Location: 53860 - 55509 (+)
Gene ID: C130_contig_2578_56
Type: TF
Location: 55484 - 56386 (-)
Gene ID: C130_contig_2578_57
Type: TC
Location: 56511 - 57866 (+)
Gene ID: C130_contig_2578_58
Type: pfam
Location: 58240 - 59166 (-)
Gene ID: C130_contig_2578_59
Type: CAZyme
Location: 59255 - 60061 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C130_contig_2578_54 vegetarian > omnivore 1.03559 0.00364
C130_contig_2578_54 vegetarian > vegan 1.38969 0.00048
C130_contig_2578_55 vegetarian > vegan 1.08177 0.00048
C130_contig_2578_56 vegetarian > vegan 1.11681 0.00048
C130_contig_2578_58 vegetarian > vegan 1.59902 0.00048
C130_contig_2578_59 vegetarian > omnivore 1.05471 0.00364
C130_contig_2578_59 vegetarian > vegan 1.94660 0.00048

🧭 Explore Read Mapping of CGC

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